Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003439 Carpinus fangiana HOM05D007715 ORTHO05D009760 3.5e-140 501.5 239 100.0
Haze_16178 Corylus avellana HOM05D007715 ORTHO05D009760 4.0e-136 488.0 239 96.7
CiPaw.02G129300 Carya illinoinensis HOM05D007715 ORTHO05D009760 1.0e-118 430.3 239 84.1
Thecc.06G056700 Theobroma cacao HOM05D007715 ORTHO05D009760 1.4e-115 419.9 239 83.3
QL05p088896 Quercus lobata HOM05D007715 ORTHO05D009760 2.3e-115 419.1 294 71.4
Manes.14G008300 Manihot esculenta HOM05D007715 ORTHO05D009760 3.0e-115 418.7 239 80.8
MD09G1165400 Malus domestica HOM05D007715 ORTHO05D009760 1.1e-114 416.8 239 82.4
CiPaw.01G208900 Carya illinoinensis HOM05D007715 ORTHO05D009760 1.5e-114 416.4 237 84.0
TAR383G0241 Trochodendron aralioides HOM05D007715 ORTHO05D009760 3.7e-113 411.8 232 81.5
RcHm_v2.0_Chr2g0149371 Rosa chinensis HOM05D007715 ORTHO05D009760 1.1e-112 410.2 239 80.3
CANSAT01G2071 Cannabis sativa HOM05D007715 ORTHO05D009760 2.4e-112 409.1 230 80.0
FvH4_6g36931 Fragaria vesca HOM05D007715 ORTHO05D009760 3.1e-112 408.7 232 80.6
Duzib235G0054 Durio zibethinus HOM05D007715 ORTHO05D009760 9.1e-112 407.1 240 80.8
Gorai.010G141800 Gossypium raimondii HOM05D007715 ORTHO05D009760 1.5e-111 406.4 235 80.4
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.0e-111 406.0 232 80.6
Ciclev10032622m.g Citrus clementina HOM05D007715 ORTHO05D009760 3.4e-111 405.2 239 80.3
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 3.4e-111 405.2 232 80.2
Eucgr.F04031 Eucalyptus grandis HOM05D007715 ORTHO05D009760 7.7e-111 404.1 239 79.9
Gohir.D06G121500 Gossypium hirsutum HOM05D007715 ORTHO05D009760 1.7e-110 402.9 235 80.0
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.5e-109 399.1 232 78.9
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.2e-109 397.5 230 79.6
MBI16_g18218_MAGBIO Magnolia biondii HOM05D007715 ORTHO05D009760 7.2e-109 397.5 229 78.2
MD17G1162300 Malus domestica HOM05D007715 ORTHO05D009760 7.2e-109 397.5 226 81.4
Potri.008G004500 Populus trichocarpa HOM05D007715 ORTHO05D009760 1.2e-108 396.7 219 80.8
CSS0043564 Camellia sinensis var. sinensis HOM05D007715 ORTHO05D009760 2.7e-108 395.6 239 77.0
Nn2g12750 Nelumbo nucifera HOM05D007715 ORTHO05D009760 2.7e-108 395.6 233 78.1
Hma1.2p1_1111F.1_g258440 Hydrangea macrophylla HOM05D007715 ORTHO05D009760 8.8e-107 390.6 240 75.8
Atru.BG.168.p Acer truncatum HOM05D007715 ORTHO05D009760 1.5e-106 389.8 211 84.4
PGR102G0299 Punica granatum HOM05D007715 ORTHO05D009760 1.1e-104 383.6 229 76.9
GSVIVG01029551001 Vitis vinifera HOM05D007715 ORTHO05D009760 9.1e-104 380.6 239 75.7
Aqoxy7G02738 Aquilegia oxysepala HOM05D007715 ORTHO05D009760 1.6e-103 379.8 232 74.1
vmacro18742 Vaccinium macrocarpon HOM05D007715 ORTHO05D009760 1.6e-103 379.8 232 75.4
Actinidia38809 Actinidia chinensis HOM05D007715 ORTHO05D009760 3.5e-103 378.6 237 74.7
EL10Ac7g18154 Beta vulgaris HOM05D007715 ORTHO05D009760 7.7e-103 377.5 227 75.3
Cpa.g.sc176.1 Carica papaya HOM05D007715 ORTHO05D009760 2.2e-102 375.9 258 68.6
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 5.0e-102 374.8 223 75.8
AUR62025668 Chenopodium quinoa HOM05D007715 ORTHO05D009760 1.1e-101 373.6 232 73.3
Cc04_g00030 Coffea canephora HOM05D007715 ORTHO05D009760 2.1e-100 369.4 230 73.9
Oeu049631.2 Olea europaea HOM05D007715 ORTHO05D009760 1.8e-99 366.3 218 75.7
Oeu049632.1 Olea europaea HOM05D007715 ORTHO05D009760 1.8e-99 366.3 218 75.7
Medtr4g005360 Medicago truncatula HOM05D007715 ORTHO05D009760 5.2e-99 364.8 223 74.0
PSO423G0174 Papaver somniferum HOM05D007715 ORTHO05D009760 6.7e-99 364.4 232 70.7
AUR62001337 Chenopodium quinoa HOM05D007715 ORTHO05D009760 1.2e-98 363.6 230 73.0
CDE05G1192 Ceratophyllum demersum HOM05D007715 ORTHO05D004987 1.5e-98 363.2 230 71.7
Hund18594 Selenicereus undatus HOM05D007715 ORTHO05D009760 1.1e-96 357.1 248 68.5
SalBow6G7190 Salvia bowleyana HOM05D007715 ORTHO05D009760 3.5e-95 352.1 226 68.1
Lsat_1_v5_gn_4_89140 Lactuca sativa HOM05D007715 ORTHO05D009760 5.9e-95 351.3 220 70.9
Lj3g0002381 Lotus japonicus HOM05D007715 ORTHO05D009760 1.3e-94 350.1 239 69.9
ATR0626G044 Amborella trichopoda HOM05D007715 ORTHO05D009760 1.7e-94 349.7 224 71.0
PGSC0003DMG400009165 Solanum tuberosum HOM05D007715 ORTHO05D009760 1.5e-93 346.7 230 70.9
Lalb_Chr01g0011671 Lupinus albus HOM05D007715 ORTHO05D009760 5.5e-93 344.7 237 68.8
Psat7g265440 Pisum sativum HOM05D007715 ORTHO05D009760 1.4e-91 340.1 224 68.3
Rhsim08G0250500 Rhododendron simsii HOM05D007715 ORTHO05D009760 1.2e-90 337.0 241 68.0
SGA_v2.0_scaffold71G23984 Striga asiatica HOM05D007715 ORTHO05D009760 4.1e-88 328.6 219 66.7
Sabra08G0002100 Salix brachista HOM05D007715 ORTHO05D009760 1.0e-86 323.9 219 68.9
HPP92_017384 Vanilla planifolia HOM05D007715 ORTHO05D009760 1.1e-85 320.5 205 68.8
Zm00001eb102140 Zea mays HOM05D007715 ORTHO05D009760 1.1e-85 320.5 221 63.3
Migut.I01201 Erythranthe guttata HOM05D007715 ORTHO05D009760 1.5e-85 320.1 226 64.2
Duzib192G0685 Durio zibethinus HOM05D007715 ORTHO05D009760 7.2e-85 317.8 176 82.4
SEGI_32597 Sequoiadendron giganteum HOM05D007715 ORTHO05D009760 7.2e-85 317.8 225 66.2
Glyma.08G224700 Glycine max HOM05D007715 ORTHO05D009760 7.5e-82 307.8 226 64.6
Sp3g18290 Schrenkiella parvula HOM05D007715 ORTHO05D009760 3.7e-81 305.4 218 64.2
AagrBONN_evm.TU.Sc2ySwM_228.4113 Anthoceros agrestis HOM05D007715 ORTHO05D009760 1.4e-80 303.5 227 59.0
Pp3c3_690 Physcomitrium patens HOM05D007715 ORTHO05D009760 2.0e-79 299.7 223 60.5
VMungo0331G1382 Vigna mungo HOM05D007715 ORTHO05D009760 1.0e-78 297.4 234 62.0
C05p44060 Brassica napus HOM05D007715 ORTHO05D009760 4.3e-77 292.0 219 62.1
Thhalv10020156m.g Eutrema salsugineum HOM05D003198 ORTHO05D009760 5.6e-77 291.6 214 64.5
A05p28660 Brassica napus HOM05D007715 ORTHO05D009760 3.6e-76 288.9 219 61.6
Mapoly0008s0087 Marchantia polymorpha HOM05D007715 ORTHO05D009760 8.0e-76 287.7 222 59.5
Nitab4.5_0005739g0020 Nicotiana tabacum HOM05D007715 ORTHO05D009760 8.0e-76 287.7 180 75.6
BraA05t21742Z Brassica rapa HOM05D007715 ORTHO05D009760 2.3e-75 286.2 219 61.2
BolC5t33128H Brassica oleracea HOM05D007715 ORTHO05D009760 3.7e-73 278.9 212 61.3
FAN20G1905 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.4e-72 276.2 156 82.7
Phvul.010G164200 Phaseolus vulgaris HOM05D007715 ORTHO05D009760 3.5e-71 272.3 252 54.0
MSTRG.22499 Avicennia marina HOM05D007715 ORTHO05D009760 4.0e-67 258.8 198 60.1
Lj9C542G6 Lonicera japonica HOM05D007715 ORTHO05D009760 8.3e-65 251.1 239 54.8
Gohir.A06G117200 Gossypium hirsutum HOM05D007715 ORTHO05D009760 4.9e-57 225.3 138 76.1
Prupe.3G023100 Prunus persica HOM05D007715 ORTHO05D009760 6.4e-57 224.9 124 83.1
Dinv20335 Davidia involucrata HOM05D007715 ORTHO05D009760 1.2e-55 220.7 137 73.7
PSO423G0098 Papaver somniferum HOM05D007715 ORTHO05D009760 1.6e-52 210.3 143 65.0
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 2.1e-52 209.9 111 87.4
Nitab4.5_0005664g0070 Nicotiana tabacum HOM05D007715 ORTHO05D009760 9.9e-50 201.1 199 51.3
Peaxi162Scf00038g02642 Petunia axillaris HOM05D007715 ORTHO05D009760 2.0e-42 176.8 102 80.4
Carub.0003s2020 Capsella rubella HOM05D007715 ORTHO05D009760 2.6e-42 176.4 132 59.1
SMO201G0133 Selaginella moellendorffii HOM05D007715 ORTHO05D009760 2.9e-41 172.9 193 45.1
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 5.6e-37 158.7 137 58.4
TPR.G38750 Trifolium pratense HOM05D007715 ORTHO05D009760 6.4e-25 118.6 87 59.8
Sopen03g041710 Solanum pennellii HOM05D007715 ORTHO05D009760 1.4e-24 117.5 191 40.3
Medtr4g005380 Medicago truncatula HOM05D007715 ORTHO05D009760 1.8e-22 110.5 81 56.8
TPR.G38822 Trifolium pratense HOM05D007715 ORTHO05D009760 1.1e-21 107.8 84 59.5
Os09g0497600 Oryza sativa ssp. japonica HOM05D007715 ORTHO05D009760 2.8e-20 103.2 67 58.2
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 1.5e-18 97.4 58 74.1
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 4.5e-18 95.9 88 58.0
Solyc03g123970.1 Solanum lycopersicum HOM05D007715 ORTHO05D009760 1.1e-08 64.7 51 66.7
AL3G33970 Arabidopsis lyrata HOM05D007715 ORTHO05D009760 2.1e-07 60.5 49 59.2


User provided reference genes

Program Settings