Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 2.7e-71 271.9 142 100.0
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 4.5e-66 254.6 143 94.4
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 4.2e-48 194.9 141 73.0
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 9.4e-48 193.7 139 68.3
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.8e-46 189.5 142 66.2
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 2.3e-46 189.1 138 68.1
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 3.9e-46 188.3 144 66.0
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 6.7e-46 187.6 142 69.0
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 1.1e-45 186.8 142 64.8
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 3.3e-45 185.3 142 64.1
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 4.4e-45 184.9 145 65.5
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 4.4e-45 184.9 145 65.5
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 4.4e-45 184.9 145 65.5
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 2.2e-44 182.6 145 66.9
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 1.4e-43 179.9 136 64.7
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 1.4e-43 179.9 145 63.4
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 5.3e-43 177.9 143 64.3
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 9.1e-43 177.2 142 61.3
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 9.1e-43 177.2 142 61.3
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 1.5e-42 176.4 121 71.9
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 2.0e-42 176.0 136 63.2
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 4.5e-42 174.9 142 60.6
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 5.9e-42 174.5 143 63.6
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 5.9e-42 174.5 144 62.5
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 5.9e-42 174.5 142 60.6
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 7.7e-42 174.1 140 64.3
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 2.2e-41 172.6 117 68.4
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 2.2e-41 172.6 155 58.1
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 2.2e-41 172.6 140 63.6
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 2.2e-41 172.6 146 63.7
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 5.0e-41 171.4 144 61.1
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 8.5e-41 170.6 141 62.4
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 1.4e-40 169.9 144 60.4
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 4.2e-40 168.3 135 60.7
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.2e-39 166.8 152 57.2
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 1.6e-39 166.4 142 59.9
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 4.7e-39 164.9 129 66.7
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.8e-38 162.9 152 55.3
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 4.4e-37 158.3 145 53.8
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 4.4e-37 158.3 143 60.1
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 1.3e-36 156.8 131 59.5
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 1.7e-36 156.4 147 51.7
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 1.7e-36 156.4 147 55.1
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 2.8e-36 155.6 139 59.7
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 3.7e-36 155.2 142 57.7
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 5.3e-35 151.4 142 56.3
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 7.0e-35 151.0 147 53.1
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 9.1e-35 150.6 145 55.2
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 1.6e-34 149.8 142 54.9
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 2.6e-34 149.1 149 50.3
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 2.2e-33 146.0 143 56.6
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 2.9e-33 145.6 142 52.1
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 2.9e-33 145.6 144 56.2
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 3.8e-33 145.2 148 52.0
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 5.0e-33 144.8 138 59.4
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 6.5e-33 144.4 101 66.3
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 8.5e-33 144.1 142 50.7
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 1.1e-32 143.7 140 56.4
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 1.5e-32 143.3 148 50.7
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 1.5e-32 143.3 148 52.7
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 2.5e-32 142.5 158 53.2
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 9.4e-32 140.6 108 63.9
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 1.6e-31 139.8 148 48.0
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 3.6e-31 138.7 123 62.6
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 6.1e-31 137.9 139 56.8
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 8.0e-31 137.5 133 57.9
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 8.0e-31 137.5 144 50.0
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 1.4e-30 136.7 132 51.5
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 1.4e-30 136.7 123 61.8
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 1.8e-30 136.3 132 51.5
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 1.8e-30 136.3 143 54.5
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 2.3e-30 136.0 147 50.3
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 5.2e-30 134.8 105 65.7
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 6.7e-30 134.4 149 51.0
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 8.8e-30 134.0 149 51.0
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 2.6e-29 132.5 149 50.3
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 3.3e-29 132.1 100 67.0
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 3.3e-29 132.1 145 51.0
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 9.7e-29 130.6 149 49.7
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 1.3e-28 130.2 136 52.2
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 8.2e-28 127.5 155 46.5
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 8.2e-28 127.5 155 46.5
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 1.1e-27 127.1 131 55.7
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 1.8e-27 126.3 91 70.3
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 2.4e-27 125.9 99 68.7
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 2.9e-25 119.0 134 50.7
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 5.0e-25 118.2 143 46.2
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 5.5e-24 114.8 132 50.0
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 9.4e-24 114.0 143 47.6
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 8.0e-23 110.9 129 46.5
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 4.0e-22 108.6 99 58.6
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 2.0e-21 106.3 114 48.2
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 2.8e-20 102.4 119 49.6
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 1.8e-19 99.8 133 43.6
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 1.8e-19 99.8 138 42.8
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 2.4e-19 99.4 95 54.7
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 5.4e-19 98.2 138 42.0
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 2.7e-18 95.9 136 41.9
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 7.7e-18 94.4 70 61.4
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 7.7e-18 94.4 157 38.9
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 6.5e-17 91.3 102 50.0
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 3.3e-16 89.0 122 45.9
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 4.7e-15 85.1 120 41.7
Pp3c19_20210 Physcomitrium patens HOM05D007364 ORTHO05D009275 9.8e-13 77.4 116 39.7
AUR62015398 Chenopodium quinoa HOM05D007364 ORTHO05D009275 6.3e-12 74.7 70 50.0
AUR62040375 Chenopodium quinoa HOM05D007364 ORTHO05D009275 6.3e-12 74.7 69 50.7
SEGI_24559 Sequoiadendron giganteum HOM05D007364 ORTHO05D009275 1.8e-11 73.2 109 41.3
Mapoly0061s0135 Marchantia polymorpha HOM05D007364 ORTHO05D009275 3.8e-09 65.5 117 32.5
SalBow7G1183 Salvia bowleyana HOM05D003223 ORTHO05D004865 3.0e-06 55.8 105 40.0


User provided reference genes

Program Settings