Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 0.0e+00 2246.1 1143 100.0
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 0.0e+00 2098.9 1229 89.0
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 1668.3 1142 75.7
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 0.0e+00 1278.5 1150 60.2
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 0.0e+00 1260.4 1144 59.1
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 0.0e+00 1247.3 1144 58.7
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 0.0e+00 1243.4 1147 58.6
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 0.0e+00 1234.9 1146 58.2
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 0.0e+00 1226.5 1148 57.1
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 0.0e+00 1223.0 1153 57.7
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 0.0e+00 1217.2 1145 57.0
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 0.0e+00 1209.9 1146 56.5
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1205.3 1146 56.5
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 0.0e+00 1196.8 1145 57.8
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 0.0e+00 1192.9 1137 56.5
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1182.5 1143 56.0
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1178.3 1146 55.5
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 0.0e+00 1176.0 1138 54.8
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 0.0e+00 1161.0 1139 54.0
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 0.0e+00 1156.0 1139 54.9
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 0.0e+00 1147.1 1201 53.9
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 0.0e+00 1145.6 1138 54.0
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 0.0e+00 1135.2 1155 53.9
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 0.0e+00 1129.0 1137 53.6
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 0.0e+00 1121.7 1143 53.5
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 0.0e+00 1120.5 981 60.6
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 0.0e+00 1118.6 1139 53.3
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 0.0e+00 1103.6 1142 52.9
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 0.0e+00 1099.0 1138 52.8
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 0.0e+00 1088.6 1145 53.5
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 0.0e+00 1081.2 1133 52.8
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 9.4e-308 1060.4 1172 50.6
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 2.1e-307 1059.3 1034 55.0
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 3.0e-306 1055.4 948 61.4
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 7.5e-305 1050.8 1163 50.5
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 2.4e-303 1045.8 1138 51.1
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 2.4e-295 1019.2 1252 47.8
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 2.1e-291 1006.1 1093 52.4
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 2.4e-287 992.6 1143 54.0
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 4.9e-280 968.4 867 60.3
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 8.3e-272 941.0 1156 47.3
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 9.2e-271 937.6 1141 47.3
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 3.1e-266 922.5 1150 46.3
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 9.9e-265 917.5 1166 46.8
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 1.2e-262 910.6 1145 47.8
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 4.6e-262 908.7 1146 46.4
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 1.5e-260 903.7 1141 45.4
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 2.0e-257 893.3 1128 46.2
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 3.4e-257 892.5 1147 45.6
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 5.8e-257 891.7 1149 45.7
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 5.4e-255 885.2 1153 45.4
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 1.5e-252 877.1 1148 45.8
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 2.4e-250 869.8 811 55.2
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 3.2e-247 859.4 1015 47.3
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 3.0e-245 852.8 1137 45.1
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 3.9e-245 852.4 1174 43.6
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 1.5e-241 840.5 1151 44.6
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 7.6e-241 838.2 1142 43.8
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 1.1e-239 834.3 948 49.9
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 3.7e-235 819.3 1097 46.2
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 3.4e-233 812.8 1141 42.8
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 9.4e-223 778.1 859 50.6
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.3e-219 767.7 863 50.5
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 2.0e-217 760.4 704 55.4
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 5.9e-217 758.8 1021 44.6
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.7e-208 730.7 700 55.0
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 9.4e-207 724.9 882 48.2
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 2.0e-204 717.2 1146 41.3
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 8.2e-203 711.8 883 46.2
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 1.1e-178 631.7 1025 39.8
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 2.9e-171 607.1 1132 35.8
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 3.1e-165 587.0 1213 33.6
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 6.2e-158 562.8 872 43.2
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 2.6e-140 504.2 1154 31.9
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 6.9e-117 426.4 406 57.6
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 4.2e-114 417.2 322 67.4
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 7.0e-93 346.7 415 50.1
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 9.1e-93 346.3 278 67.6
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 5.9e-92 343.6 407 50.6
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 2.2e-91 341.7 316 58.2
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 8.8e-88 329.7 852 30.8
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 8.0e-81 306.6 333 52.6
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 1.3e-78 299.3 1105 26.7
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 3.7e-78 297.7 274 58.8
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 2.0e-71 275.4 262 58.0
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 1.7e-70 272.3 217 67.7
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 3.1e-69 268.1 203 61.6
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 3.5e-68 264.6 233 63.5
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 4.7e-65 254.2 436 39.9
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 2.2e-62 245.4 158 81.6
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 2.2e-62 245.4 158 81.6
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.8e-56 225.7 418 33.0
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 1.9e-42 179.1 990 24.7
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 2.6e-39 168.7 160 58.1
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 6.4e-38 164.1 162 54.3
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 1.7e-35 156.0 169 51.5
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 1.7e-35 156.0 221 43.9
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 2.3e-35 155.6 123 68.3
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.6e-28 132.9 832 22.8
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 3.0e-27 128.6 85 72.9
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.8e-19 102.8 90 60.0
Medtr7g110110 Medicago truncatula HOM05D007419 ORTHO05D009327 6.4e-14 84.3 124 42.7


User provided reference genes

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