Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 2.7e-39 164.9 81 100.0
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 1.0e-38 162.9 80 98.8
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 6.3e-33 143.7 81 86.4
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 3.1e-32 141.4 81 85.2
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 9.2e-32 139.8 81 82.7
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 8.6e-30 133.3 80 78.8
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 80.2
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.5e-29 132.5 81 77.8
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 1.9e-29 132.1 81 77.8
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 2.5e-29 131.7 80 77.5
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 3.3e-29 131.3 81 72.8
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 77.8
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 7.3e-29 130.2 81 79.0
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 7.3e-29 130.2 81 76.5
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 76.5
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 76.5
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 76.5
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 2.1e-28 128.6 81 76.5
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 2.1e-28 128.6 81 76.5
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.1e-28 128.6 81 76.5
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.1e-28 128.6 81 76.5
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.1e-28 128.6 81 76.5
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 2.8e-28 128.3 81 74.1
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 3.6e-28 127.9 81 74.1
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 74.1
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 71.6
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 74.1
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 74.1
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 70.4
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 72.8
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 6.8e-27 123.6 81 72.8
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 6.8e-27 123.6 81 70.4
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 6.8e-27 123.6 81 69.1
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 6.8e-27 123.6 81 74.1
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 8.9e-27 123.2 81 71.6
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 1.2e-26 122.9 81 72.8
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 71.6
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 74.1
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 71.6
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 71.6
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 70.4
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 2.6e-26 121.7 81 71.6
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.6e-26 121.7 81 70.4
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 3.4e-26 121.3 81 69.1
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 66.7
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 5.7e-26 120.6 82 73.2
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 70.4
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 70.4
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 70.4
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 71.6
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 67.9
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 69.1
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 69.1
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 2.9e-25 118.2 81 67.9
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 3.7e-25 117.9 79 68.4
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 66.7
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 69.1
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 70.4
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 70.4
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 67.9
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 66.7
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 69.1
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 69.1
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 66.7
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 65.4
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 1.8e-24 115.5 82 70.7
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 69.1
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 70.4
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 65.4
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 66.7
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 66.7
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 65.4
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 65.4
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 66.7
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 2.7e-23 111.7 79 64.6
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 7.8e-23 110.2 82 65.9
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 7.8e-23 110.2 81 61.7
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 7.8e-23 110.2 81 61.7
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 1.0e-22 109.8 81 64.2
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 64.2
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 63.0
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 60.5
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 1.9e-21 105.5 81 64.2
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 2.5e-21 105.1 81 63.0
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 2.5e-21 105.1 81 63.0
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 2.5e-21 105.1 81 63.0
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 2.5e-21 105.1 81 63.0
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 4.3e-21 104.4 81 60.5
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 4.3e-21 104.4 78 57.7
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 7.3e-21 103.6 81 61.7
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 4.7e-20 100.9 79 59.5
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.8e-19 99.0 79 59.5
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 4.0e-19 97.8 81 55.6
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 1.3e-17 92.8 76 59.2
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 4.9e-17 90.9 57 70.2
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 3.2e-16 88.2 59 66.1
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 4.1e-16 87.8 57 68.4
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 7.0e-16 87.0 59 71.2
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 1.2e-15 86.3 59 69.5
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 7.8e-15 83.6 62 66.1
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 7.8e-15 83.6 59 67.8
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 3.0e-14 81.6 78 51.3
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 1.1e-13 79.7 63 57.1
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 2.8e-12 75.1 80 45.0
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 5.2e-11 70.9 77 53.2
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 2.0e-10 68.9 77 45.5
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 2.6e-10 68.6 45 66.7
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 2.6e-10 68.6 80 41.2
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 2.4e-08 62.0 41 70.7
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 2.4e-08 62.0 41 70.7
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 7.1e-08 60.5 43 67.4
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 1.3e-06 56.2 56 44.6
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 2.3e-06 55.5 40 60.0


User provided reference genes

Program Settings