Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.2e-255 885.9 439 100.0
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 8.5e-249 863.2 439 97.0
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 2.3e-222 775.4 447 85.9
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 2.8e-207 725.3 408 86.3
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.7e-204 716.1 442 80.8
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 3.2e-203 711.8 436 81.0
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.1e-202 709.1 439 80.0
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.1e-202 709.1 438 79.7
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 4.6e-202 708.0 439 79.7
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.0e-201 705.3 439 79.5
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 3.3e-200 701.8 443 81.3
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 9.5e-200 700.3 448 78.6
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 9.9e-197 690.3 438 78.3
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.4e-195 686.4 406 82.3
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.9e-193 678.3 439 76.1
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.9e-193 678.3 441 78.0
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 6.2e-191 671.0 435 76.3
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 2.4e-190 669.1 440 76.6
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 2.4e-190 669.1 446 76.7
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 2.6e-189 665.6 446 75.8
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 3.4e-189 665.2 438 76.0
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 9.9e-189 663.7 446 75.6
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.9e-187 659.4 443 74.7
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 2.4e-187 659.1 429 77.2
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 6.0e-186 654.4 445 74.4
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 5.1e-185 651.4 446 73.5
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 5.1e-185 651.4 445 73.9
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 8.7e-185 650.6 454 72.7
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 1.1e-184 650.2 426 76.5
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.5e-184 649.8 447 73.6
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.5e-184 649.8 441 74.4
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 4.3e-184 648.3 448 73.9
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.2e-183 646.7 413 77.0
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.2e-183 646.7 439 72.7
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 6.2e-183 644.4 451 71.8
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.8e-181 637.9 438 71.7
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.7e-180 636.3 409 76.3
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.4e-179 633.3 444 71.4
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.9e-179 632.9 395 77.7
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 2.4e-179 632.5 440 72.7
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 9.3e-179 630.6 408 75.0
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 2.1e-178 629.4 452 71.5
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 2.1e-178 629.4 440 72.7
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 4.6e-178 628.2 430 74.0
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 6.0e-178 627.9 440 71.8
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 7.8e-178 627.5 405 74.8
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 3.0e-177 625.5 421 74.8
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.5e-176 623.2 495 69.1
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 2.5e-176 622.5 404 75.2
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 5.6e-176 621.3 413 74.8
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 9.6e-176 620.5 439 70.8
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.3e-175 620.2 443 71.8
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 1.6e-175 619.8 418 73.7
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 4.8e-175 618.2 453 71.3
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.4e-174 616.7 426 71.1
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 2.4e-174 615.9 441 70.3
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 2.4e-174 615.9 417 71.9
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 3.1e-174 615.5 438 70.5
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 4.0e-174 615.1 447 70.2
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 5.3e-174 614.8 387 76.0
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 9.0e-174 614.0 394 77.7
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.2e-173 613.6 410 72.4
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 3.4e-173 612.1 438 70.8
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 3.4e-173 612.1 439 70.4
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.3e-172 610.1 439 70.2
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 3.8e-172 608.6 419 70.9
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 4.9e-172 608.2 409 73.6
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.4e-171 606.7 401 74.8
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 3.5e-170 602.1 443 69.1
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 4.6e-170 601.7 445 71.7
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 6.0e-170 601.3 404 74.0
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.3e-169 599.4 444 69.6
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 3.9e-169 598.6 407 72.5
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 3.9e-169 598.6 407 72.5
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 5.1e-169 598.2 408 72.1
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 1.9e-168 596.3 434 71.7
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.5e-168 595.9 421 71.0
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.5e-168 595.9 439 69.7
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.3e-168 595.1 451 70.3
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 5.6e-168 594.7 413 71.4
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 7.4e-168 594.3 443 70.0
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 7.4e-168 594.3 429 71.3
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 9.6e-168 594.0 388 74.0
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.3e-167 593.6 407 72.0
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 2.8e-167 592.4 402 71.4
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 6.2e-167 591.3 444 71.2
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 3.1e-166 589.0 423 70.4
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 4.0e-166 588.6 417 71.7
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 4.0e-166 588.6 417 71.7
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 5.3e-166 588.2 423 70.4
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.2e-165 587.0 405 72.3
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 4.5e-165 585.1 396 72.5
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 5.8e-165 584.7 407 71.5
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 9.9e-165 583.9 437 69.6
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 1.3e-164 583.6 396 72.0
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 2.2e-164 582.8 424 70.8
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 2.9e-164 582.4 424 70.8
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 6.0e-162 574.7 418 68.9
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 6.0e-162 574.7 393 72.3
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.3e-161 573.5 410 71.7
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 2.3e-161 572.8 438 65.8
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 8.7e-161 570.9 373 75.9
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.3e-159 567.0 396 70.5
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.6e-159 566.6 450 64.4
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 2.6e-157 559.3 393 69.7
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.6e-157 559.3 311 86.2
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 3.4e-157 558.9 418 68.2
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 3.4e-157 558.9 390 70.0
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.5e-157 558.5 402 68.9
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.9e-156 555.8 398 68.8
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.6e-154 550.1 389 70.4
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 6.1e-154 548.1 390 68.2
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.0e-153 547.4 389 70.2
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 1.8e-153 546.6 389 68.9
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 3.0e-153 545.8 387 69.0
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.1e-152 543.9 389 68.4
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.9e-152 543.1 436 64.2
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 3.4e-149 532.3 347 76.9
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 3.2e-147 525.8 385 66.5
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 5.5e-147 525.0 330 76.4
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 2.7e-146 522.7 398 67.6
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.8e-143 512.7 386 66.3
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 3.7e-143 512.3 388 67.3
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.8e-142 510.0 397 66.5
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.4e-142 509.6 387 65.6
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.4e-139 500.4 398 62.3
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.1e-134 482.3 263 87.1
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 5.3e-134 481.9 406 62.3
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 8.2e-127 458.0 387 60.5
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 4.8e-119 432.2 280 75.7
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.8e-110 403.7 252 76.2
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.8e-110 403.7 248 77.0
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.1e-107 394.4 282 69.9
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 4.7e-106 389.0 281 68.0
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 3.2e-102 376.3 385 50.9
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 9.2e-94 348.2 399 48.6
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 6.0e-93 345.5 274 58.8
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 7.3e-91 338.6 419 46.3
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 2.1e-90 337.0 234 70.5
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 8.9e-89 331.6 256 61.7
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 7.1e-78 295.4 174 82.2
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.3e-76 290.4 197 74.1
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.0e-68 265.0 176 72.7
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 1.8e-65 254.2 199 65.3
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 6.9e-65 252.3 296 46.3
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 6.0e-61 239.2 202 59.4
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.3e-52 210.7 196 56.6
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.2e-47 194.1 203 54.2
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 1.2e-45 188.3 118 79.7
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.8e-44 184.5 234 47.9
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 5.7e-43 179.5 231 42.0
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.9e-38 164.5 232 44.0
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 3.5e-37 160.2 82 89.0
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 3.1e-33 147.1 181 47.5
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 5.0e-31 139.8 304 32.6
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 7.9e-29 132.5 76 82.9
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.4e-28 131.7 299 33.1
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.3e-26 125.2 254 34.6
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.7e-26 124.8 349 28.1
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.8e-26 123.2 68 82.4
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-25 121.7 68 80.9
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.4e-25 121.7 268 34.0
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.4e-25 120.9 68 80.9
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 2.6e-19 100.9 119 47.1
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 9.7e-19 99.0 146 41.1
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 3.1e-17 94.0 141 36.2
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 7.0e-17 92.8 89 51.7
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 2.3e-12 77.8 94 46.8
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.6e-11 74.3 67 50.7
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-09 68.9 38 78.9
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.4e-09 67.8 119 38.7
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 3.2e-06 57.4 144 28.5


User provided reference genes

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