Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 2.1e-155 552.4 288 100.0
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 3.1e-151 538.5 288 96.5
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 8.3e-136 487.3 287 85.4
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 3.2e-135 485.3 288 86.1
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 4.6e-134 481.5 288 85.4
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 5.0e-133 478.0 288 83.3
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 3.3e-132 475.3 288 82.6
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 7.3e-132 474.2 288 82.6
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 1.4e-130 469.9 288 83.3
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 6.8e-130 467.6 288 83.3
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 4.4e-129 464.9 288 81.2
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 1.3e-128 463.4 288 81.9
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 1.3e-128 463.4 288 79.2
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 2.2e-128 462.6 288 80.9
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 2.9e-128 462.2 288 80.6
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 2.9e-128 462.2 288 80.6
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 3.7e-128 461.8 288 81.2
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 1.9e-127 459.5 288 80.2
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 4.1e-127 458.4 288 79.5
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 7.1e-127 457.6 288 78.5
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 7.1e-127 457.6 288 80.6
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 7.1e-127 457.6 288 80.2
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 1.6e-126 456.4 289 79.2
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 1.6e-126 456.4 288 79.2
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 1.0e-125 453.8 288 80.6
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 3.0e-125 452.2 288 79.9
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 6.6e-125 451.1 288 78.8
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 2.5e-124 449.1 288 78.8
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 3.3e-124 448.7 288 78.8
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 2.8e-123 445.7 288 79.5
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 3.6e-123 445.3 288 76.4
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 4.7e-123 444.9 288 78.1
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 1.1e-122 443.7 288 76.0
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 1.4e-122 443.4 280 79.3
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 1.4e-122 443.4 288 78.1
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 3.1e-122 442.2 287 76.7
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 4.0e-122 441.8 280 78.9
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 4.0e-122 441.8 288 77.4
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 5.2e-122 441.4 288 78.1
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 1.5e-121 439.9 280 78.2
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 2.0e-121 439.5 280 78.6
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 3.4e-121 438.7 280 78.6
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 4.4e-121 438.3 280 78.2
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 4.4e-121 438.3 280 78.2
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 4.4e-121 438.3 280 78.2
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 7.6e-121 437.6 280 77.5
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 1.3e-120 436.8 280 76.8
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 1.3e-120 436.8 282 76.6
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 1.7e-120 436.4 288 77.8
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 2.2e-120 436.0 288 75.7
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 6.4e-120 434.5 280 76.1
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 8.4e-120 434.1 288 75.3
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 1.1e-119 433.7 280 77.1
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 1.4e-119 433.3 288 76.0
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 7.1e-119 431.0 288 75.0
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 7.8e-118 427.6 288 74.0
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 1.0e-117 427.2 283 76.0
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 6.6e-117 424.5 288 75.3
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 1.1e-116 423.7 288 76.0
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 1.5e-116 423.3 282 75.5
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 2.5e-116 422.5 288 74.0
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 3.3e-116 422.2 280 75.7
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 4.3e-116 421.8 251 81.3
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 7.3e-116 421.0 322 68.3
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 1.4e-114 416.8 284 73.9
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 2.4e-114 416.0 288 73.6
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 2.4e-114 416.0 288 73.6
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 2.4e-114 416.0 288 72.6
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 4.0e-114 415.2 285 76.1
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 8.4e-112 407.5 249 81.9
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 7.8e-110 401.0 291 70.4
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 6.6e-109 397.9 288 69.8
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 1.9e-108 396.4 282 70.2
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 9.6e-108 394.0 282 72.0
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 2.1e-107 392.9 288 69.4
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 2.1e-107 392.9 291 68.0
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 3.6e-107 392.1 282 70.2
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 6.2e-107 391.3 426 52.8
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 8.1e-107 391.0 264 74.6
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 4.0e-106 388.7 283 67.1
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 4.0e-106 388.7 282 69.1
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 5.3e-106 388.3 249 78.3
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 2.6e-105 386.0 348 60.9
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 3.4e-105 385.6 279 68.5
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 3.8e-104 382.1 285 69.5
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 7.1e-103 377.9 279 67.0
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 1.7e-101 373.2 301 67.1
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 3.9e-101 372.1 271 68.6
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 2.5e-100 369.4 288 63.9
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 9.6e-100 367.5 288 63.9
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 5.3e-98 361.7 236 79.2
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 2.0e-97 359.8 283 66.1
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 5.8e-97 358.2 236 75.0
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 9.9e-97 357.5 288 61.1
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 2.7e-94 349.4 322 57.5
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 3.1e-90 335.9 219 77.6
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 5.3e-90 335.1 288 61.1
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 9.0e-90 334.3 222 74.8
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 3.5e-86 322.4 284 55.6
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 5.1e-85 318.5 199 79.9
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 3.3e-84 315.8 282 54.6
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 1.7e-80 303.5 285 53.3
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 7.9e-78 294.7 243 65.4
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 3.7e-75 285.8 290 56.9
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 2.7e-62 243.0 143 84.6
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 5.0e-56 222.2 164 63.4
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 2.2e-51 206.8 271 44.3
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 1.4e-50 204.1 323 39.9
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 7.7e-49 198.4 181 52.5
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 4.8e-43 179.1 130 69.2
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.3e-40 171.0 181 52.5
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 1.4e-37 161.0 265 38.9
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 1.4e-37 161.0 116 73.3
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 5.4e-34 149.1 117 68.4
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 4.5e-33 146.0 160 50.6
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.8e-29 134.0 93 72.0
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.5e-28 131.0 189 41.8
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 4.4e-28 129.4 95 69.5
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 7.0e-26 122.1 161 44.7
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 5.2e-13 79.3 144 42.4
TAR636G3545 Trochodendron aralioides HOM05D006393 ORTHO05D008088 2.1e-09 67.4 50 66.0
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 6.0e-09 65.9 58 55.2
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 3.0e-08 63.5 58 53.4
Actinidia20331 Actinidia chinensis HOM05D006393 ORTHO05D008088 1.9e-07 60.8 34 85.3
Zm00001eb117320 Zea mays HOM05D006393 ORTHO05D444415 9.5e-07 58.5 55 63.6


User provided reference genes

Program Settings