Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 1.9e-107 392.5 198 100.0
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.3e-92 343.2 211 83.4
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 1.1e-91 340.1 211 83.4
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 5.6e-91 337.8 212 81.6
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.6e-90 336.3 211 81.0
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 8.9e-89 330.5 211 80.1
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 5.8e-88 327.8 212 79.7
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 2.9e-87 325.5 194 87.1
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 8.4e-87 323.9 212 78.8
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.1e-86 323.6 212 78.8
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.4e-86 322.4 206 79.6
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 4.2e-86 321.6 210 78.1
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 4.2e-86 321.6 211 78.2
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.6e-85 319.7 212 75.9
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 6.0e-85 317.8 208 75.5
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 7.8e-85 317.4 211 75.4
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 1.0e-84 317.0 206 77.2
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 1.7e-84 316.2 205 79.0
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.0e-84 315.5 212 74.5
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 5.1e-84 314.7 212 73.6
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.1e-83 313.5 208 75.0
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.3e-83 311.6 210 74.3
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 7.3e-83 310.8 210 74.3
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 9.6e-83 310.5 206 76.2
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.3e-82 310.1 210 73.8
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.3e-82 310.1 205 76.1
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.8e-82 308.9 210 73.8
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 4.8e-82 308.1 209 74.2
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 4.8e-82 308.1 205 76.1
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 8.1e-82 307.4 207 73.9
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 1.8e-81 306.2 209 74.2
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 3.1e-81 305.4 211 73.9
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 3.1e-81 305.4 215 74.4
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 5.3e-81 304.7 209 74.6
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 9.0e-81 303.9 209 72.2
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.2e-80 303.5 209 74.2
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 2.0e-80 302.8 205 74.6
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 2.0e-80 302.8 209 72.2
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 3.4e-80 302.0 206 73.8
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 4.4e-80 301.6 210 72.9
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 1.3e-79 300.1 209 73.2
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.7e-79 299.7 205 74.1
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 2.2e-79 299.3 209 71.8
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 4.9e-79 298.1 209 72.2
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 4.9e-79 298.1 211 72.0
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 4.9e-79 298.1 209 72.2
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 4.9e-79 298.1 205 72.7
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 8.4e-79 297.4 209 71.8
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 8.4e-79 297.4 212 70.8
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 8.4e-79 297.4 211 71.6
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.1e-78 297.0 209 71.3
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 1.4e-78 296.6 211 71.1
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 3.2e-78 295.4 209 70.8
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 7.1e-78 294.3 170 82.4
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.2e-77 293.5 210 69.0
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 4.6e-77 291.6 216 69.0
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 4.6e-77 291.6 209 70.3
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 6.0e-77 291.2 209 68.9
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 7.9e-77 290.8 209 70.3
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 1.0e-76 290.4 210 70.0
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 1.0e-76 290.4 212 69.8
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 1.3e-76 290.0 209 69.4
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 2.3e-76 289.3 210 69.5
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 6.6e-76 287.7 208 69.7
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 6.6e-76 287.7 208 69.7
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 8.7e-76 287.3 208 69.7
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 8.7e-76 287.3 208 68.8
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.1e-75 287.0 230 64.8
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.5e-75 286.6 208 69.2
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.9e-75 286.2 208 68.3
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.9e-75 286.2 209 67.9
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 2.5e-75 285.8 208 69.2
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 2.5e-75 285.8 208 68.3
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 2.5e-75 285.8 208 69.2
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 4.3e-75 285.0 208 67.8
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 5.6e-75 284.6 208 68.8
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 5.6e-75 284.6 205 71.2
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 7.3e-75 284.3 208 68.3
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 7.3e-75 284.3 210 69.5
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 7.3e-75 284.3 203 71.4
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 9.6e-75 283.9 167 81.4
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 9.6e-75 283.9 208 69.2
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 1.6e-74 283.1 211 71.6
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 2.1e-74 282.7 208 68.3
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.8e-74 282.3 209 68.9
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 4.8e-74 281.6 208 67.8
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.1e-73 280.4 208 68.3
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.4e-73 280.0 171 78.4
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 6.9e-73 277.7 168 79.2
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 1.2e-72 276.9 209 66.5
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.5e-72 276.6 209 68.4
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 1.1e-70 270.4 215 65.6
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 1.4e-70 270.0 211 66.4
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 3.2e-70 268.9 205 66.8
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 5.5e-70 268.1 206 65.5
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 2.8e-66 255.8 203 61.6
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 6.2e-66 254.6 178 74.7
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 8.1e-66 254.2 214 61.7
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 4.0e-65 251.9 212 59.9
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.4e-62 243.4 203 57.6
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 6.0e-61 238.0 206 60.7
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.3e-60 236.9 203 58.1
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 8.7e-60 234.2 203 59.6
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 5.7e-59 231.5 203 59.1
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 5.9e-56 221.5 235 52.3
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 6.5e-55 218.0 136 75.0
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 9.3e-54 214.2 157 70.7
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 7.4e-51 204.5 157 68.2
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 3.7e-50 202.2 123 77.2
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 6.3e-50 201.4 159 67.3
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 8.2e-50 201.1 156 66.7
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 4.1e-49 198.7 170 61.2
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 2.5e-46 189.5 123 73.2
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 2.5e-46 189.5 123 73.2
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 1.5e-40 170.2 182 48.4
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 2.0e-40 169.9 211 44.1
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.0e-39 167.5 208 44.7
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 7.9e-37 157.9 209 43.5
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 2.1e-29 133.3 182 42.3
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 2.1e-29 133.3 182 42.3
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 3.8e-23 112.5 95 64.2
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.0e-20 104.4 91 62.6
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 5.2e-20 102.1 89 58.4
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.7e-18 97.1 165 35.2
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 5.4e-17 92.0 65 61.5
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 5.9e-16 88.6 73 60.3
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 2.2e-15 86.7 52 78.8
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 5.0e-15 85.5 58 70.7
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 4.4e-11 72.4 44 77.3
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 1.7e-10 70.5 51 64.7
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 8.3e-10 68.2 135 37.8
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 2.0e-08 63.5 36 77.8
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 3.5e-08 62.8 39 79.5
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 4.5e-08 62.4 33 90.9
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 4.5e-08 62.4 33 90.9
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.7e-07 60.5 33 84.8
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 3.8e-07 59.3 52 57.7


User provided reference genes

Program Settings