Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 9.3e-131 470.7 331 100.0
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.1e-127 459.5 331 94.6
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 4.2e-99 365.5 320 77.2
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 3.0e-97 359.4 318 78.3
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 2.5e-96 356.3 318 71.7
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.3e-95 354.0 318 78.9
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.6e-95 353.6 318 77.0
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 3.7e-95 352.4 319 71.2
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 8.2e-95 351.3 340 73.8
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 4.1e-94 349.0 325 76.0
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.5e-93 347.1 317 76.3
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 5.0e-92 342.0 323 73.4
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 6.5e-92 341.7 318 80.5
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 2.5e-91 339.7 319 73.4
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 2.5e-91 339.7 340 73.8
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 4.2e-91 339.0 338 72.5
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 5.5e-91 338.6 330 74.2
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 4.6e-90 335.5 340 65.3
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 6.1e-90 335.1 331 65.6
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 7.9e-90 334.7 330 73.9
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 3.0e-89 332.8 320 73.8
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 3.0e-89 332.8 320 73.8
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 2.5e-88 329.7 318 71.7
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 3.3e-88 329.3 353 59.2
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.2e-87 326.6 315 72.4
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.2e-87 326.6 315 72.4
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.7e-87 325.9 324 74.1
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 4.8e-87 325.5 318 73.9
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 6.9e-86 321.6 339 73.2
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.5e-85 320.5 332 67.5
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 2.6e-85 319.7 323 71.8
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.5e-85 318.9 324 73.5
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 5.9e-85 318.5 322 73.0
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.0e-84 317.8 311 69.5
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.3e-84 317.4 338 72.8
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 2.2e-84 316.6 327 70.9
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 2.2e-84 316.6 334 72.5
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 2.9e-84 316.2 329 72.6
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 3.8e-84 315.8 315 67.0
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 5.0e-84 315.5 323 72.1
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 6.5e-84 315.1 324 67.9
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.5e-84 314.7 337 70.3
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 8.5e-84 314.7 333 70.3
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 5.5e-83 312.0 337 71.2
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 7.2e-83 311.6 339 69.6
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.6e-82 310.5 337 70.6
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 3.6e-82 309.3 323 70.6
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 6.1e-82 308.5 327 70.0
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 7.9e-82 308.1 322 71.1
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.8e-81 307.0 323 69.7
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 5.1e-81 305.4 323 70.9
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 6.7e-81 305.1 324 71.6
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.7e-81 305.1 318 71.7
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.7e-81 305.1 318 71.7
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 8.8e-81 304.7 319 64.6
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 2.0e-80 303.5 323 63.8
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.0e-80 303.5 339 68.7
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 7.4e-80 301.6 323 63.5
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 7.4e-80 301.6 323 62.5
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 7.4e-80 301.6 323 68.4
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 9.7e-80 301.2 323 63.5
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.3e-79 300.8 319 69.9
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.7e-79 300.4 324 70.7
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 4.8e-79 298.9 323 63.8
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 6.3e-79 298.5 323 62.5
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 1.1e-78 297.7 319 69.0
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-78 297.4 319 69.3
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 7.0e-78 295.0 323 62.2
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 9.1e-78 294.7 323 62.5
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 9.1e-78 294.7 323 62.5
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 2.0e-77 293.5 322 62.7
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 4.5e-77 292.4 332 69.0
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-76 290.8 337 66.2
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 1.3e-76 290.8 328 63.1
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.9e-76 289.7 319 60.8
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 3.8e-76 289.3 323 61.6
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 6.5e-76 288.5 329 67.5
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 6.5e-76 288.5 338 66.6
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 8.5e-76 288.1 319 68.0
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.5e-75 287.3 333 64.9
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 3.2e-75 286.2 324 60.8
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 3.2e-75 286.2 323 67.8
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 3.2e-75 286.2 329 67.5
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 3.6e-74 282.7 332 66.6
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 3.6e-74 282.7 312 71.8
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 1.8e-73 280.4 324 63.0
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 2.3e-73 280.0 329 66.9
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.0e-73 279.6 305 72.1
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 6.7e-73 278.5 324 67.0
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 8.8e-73 278.1 318 59.4
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 3.3e-72 276.2 241 72.6
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.2e-71 273.5 303 63.0
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 4.8e-71 272.3 344 56.4
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 8.2e-71 271.6 318 63.8
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.1e-70 271.2 332 64.8
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.4e-70 270.8 295 72.5
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 2.4e-70 270.0 328 64.3
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 5.3e-70 268.9 327 65.1
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 9.1e-70 268.1 310 66.8
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 2.0e-69 266.9 312 69.6
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 4.5e-69 265.8 318 66.0
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 5.0e-68 262.3 231 69.7
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.9e-67 260.4 325 60.9
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.2e-67 259.2 312 67.6
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 7.2e-67 258.5 297 61.3
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 7.2e-67 258.5 292 68.2
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.3e-65 253.4 325 57.8
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.3e-63 247.7 293 68.6
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 2.2e-63 246.9 217 61.3
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 2.8e-63 246.5 310 64.2
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 2.8e-63 246.5 322 59.9
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.4e-62 244.2 314 60.5
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 4.5e-61 239.2 236 56.8
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.7e-60 237.3 291 60.5
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.9e-59 233.8 318 56.3
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 6.3e-55 218.8 232 63.8
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.4e-54 216.9 163 71.2
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-50 204.5 221 60.2
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 2.8e-50 203.4 185 61.6
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.8e-50 203.4 156 74.4
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-49 200.7 183 68.9
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-49 200.3 219 60.7
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 3.0e-49 199.9 321 50.2
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 6.8e-49 198.7 306 52.6
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 7.5e-48 195.3 310 52.3
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 6.4e-47 192.2 192 54.7
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 8.3e-47 191.8 192 54.7
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 4.6e-45 186.0 185 57.3
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-44 184.5 157 74.5
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 3.0e-44 183.3 315 50.5
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 3.0e-44 183.3 192 60.4
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 5.0e-44 182.6 171 60.2
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 8.6e-44 181.8 296 55.1
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 8.6e-44 181.8 161 61.5
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 5.6e-43 179.1 151 80.8
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 7.3e-43 178.7 152 63.2
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 7.3e-43 178.7 207 78.3
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 1.2e-42 177.9 308 55.2
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 1.6e-42 177.6 212 75.0
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 4.4e-40 169.5 149 62.4
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 5.8e-40 169.1 306 47.4
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 7.5e-40 168.7 317 46.7
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.5e-35 154.5 126 65.1
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.9e-35 154.1 161 54.0
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.8e-34 150.2 183 74.9
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 3.6e-34 149.8 130 61.5
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.5e-32 144.4 308 47.1
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.2e-31 140.6 123 61.0
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 8.3e-31 138.7 152 53.9
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 1.7e-23 114.4 176 45.5
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 7.8e-21 105.5 281 38.4
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 3.6e-18 96.7 96 56.2
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-15 88.2 93 55.9
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-14 84.7 93 53.8
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-14 84.7 93 53.8
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 1.6e-13 81.3 96 46.9
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 7.8e-13 79.0 54 72.2
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.0e-12 78.6 147 35.4
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-12 77.4 86 53.5
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 8.7e-12 75.5 102 44.1
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 7.3e-11 72.4 46 78.3
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.8e-09 67.8 77 51.9
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 9.0e-09 65.5 67 55.2
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.2e-08 65.1 163 42.3
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.4e-08 63.5 67 53.7
C05p31220 Brassica napus HOM05D000252 ORTHO05D004664 2.2e-07 60.8 29 96.6
Atru.chr3.2835 Acer truncatum HOM05D004175 ORTHO05D004664 4.2e-06 56.6 31 87.1


User provided reference genes

Program Settings