Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.2e-133 479.9 262 100.0
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.3e-132 476.5 262 98.9
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.3e-123 445.3 262 92.0
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 5.6e-123 444.5 262 90.8
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 90.1
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 90.5
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 90.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.4e-121 439.9 262 90.5
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 90.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 90.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 90.8
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 3.1e-121 438.7 261 90.0
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 89.3
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 89.7
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 88.9
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 89.3
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 88.5
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 88.5
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 88.5
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 89.3
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 89.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 88.9
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 88.9
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 88.5
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 88.5
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 88.9
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 86.6
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 87.8
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 88.2
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 87.8
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 86.6
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 4.2e-118 428.3 262 86.6
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 86.3
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 87.0
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 87.4
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 85.9
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 87.4
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 87.4
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 86.6
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 85.5
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 86.6
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 85.5
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 6.7e-116 421.0 263 87.1
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 87.0
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.1e-115 420.2 263 85.9
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 85.9
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 84.4
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 85.5
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 84.0
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 5.6e-115 417.9 263 86.3
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 85.1
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 85.1
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 85.9
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 85.9
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 84.7
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 85.5
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 83.6
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.6e-114 416.4 263 85.9
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 84.4
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 84.7
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 85.9
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 1.1e-113 413.7 259 86.9
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 84.0
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 84.0
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 83.6
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.8e-113 412.9 262 85.5
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.8e-113 412.9 262 83.6
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 2.4e-113 412.5 262 83.2
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 2.4e-113 412.5 262 83.6
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 5.3e-113 411.4 262 82.4
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 82.8
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 81.3
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 85.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.2e-112 410.2 262 84.0
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.5e-112 409.8 262 83.2
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.5e-112 409.8 262 83.6
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.5e-112 409.8 262 82.8
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.5e-112 409.8 262 82.8
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 82.8
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.7e-111 406.4 262 83.2
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 4.9e-111 404.8 262 82.4
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 8.4e-111 404.1 262 82.4
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 8.4e-111 404.1 262 82.4
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.1e-110 403.7 253 83.8
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 2.5e-110 402.5 262 84.4
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.5e-110 402.5 264 81.8
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 7.1e-110 401.0 264 82.2
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.6e-109 399.8 262 80.9
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.6e-109 399.8 262 82.8
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.8e-108 396.4 263 81.0
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 81.7
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 3.0e-108 395.6 247 86.6
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 3.9e-108 395.2 264 81.4
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 81.3
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 6.7e-108 394.4 247 86.2
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 81.3
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 4.8e-106 388.3 253 83.8
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 8.2e-106 387.5 260 81.2
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.1e-105 387.1 263 80.2
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 3.1e-105 385.6 262 78.6
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 78.6
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 78.6
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 78.6
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 78.6
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 78.6
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 78.6
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 78.6
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 78.6
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 77.9
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 78.2
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 78.2
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 78.6
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 78.2
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 78.6
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 4.5e-104 381.7 262 78.2
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 4.5e-104 381.7 262 78.6
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 5.8e-104 381.3 262 79.0
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 5.8e-104 381.3 263 80.6
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 5.8e-104 381.3 270 77.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 7.6e-104 380.9 262 78.2
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 7.6e-104 380.9 263 80.6
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 78.3
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 78.3
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 78.3
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 4.2e-102 375.2 263 79.1
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 6.0e-101 371.3 263 79.8
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.3e-100 370.2 263 78.7
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 2.3e-100 369.4 270 74.4
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.5e-99 366.7 248 80.2
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.5e-99 366.7 262 77.9
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 9.7e-99 364.0 263 78.3
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.5e-96 356.7 264 76.9
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.6e-96 355.9 249 74.3
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.3e-95 353.6 262 76.0
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 9.4e-94 347.4 218 85.8
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.1e-91 340.5 234 76.5
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 3.3e-91 339.0 241 78.8
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.3e-90 337.0 210 84.8
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.8e-89 333.2 262 71.8
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 6.9e-89 331.3 263 67.3
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 2.6e-88 329.3 226 76.1
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.6e-88 329.3 214 82.7
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 6.5e-87 324.7 220 75.9
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.7e-85 318.5 263 65.4
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 5.7e-83 311.6 217 75.1
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 7.0e-81 304.7 267 63.3
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-79 300.1 250 70.0
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.1e-78 297.4 247 68.4
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 2.8e-74 282.7 218 67.4
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.8e-74 282.7 236 63.1
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 3.1e-73 279.3 204 75.5
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 6.5e-71 271.6 263 61.2
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.1e-70 270.8 208 68.3
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 7.2e-70 268.1 250 62.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 6.1e-69 265.0 262 62.6
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 9.7e-67 257.7 270 56.3
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 8.0e-61 238.0 211 60.7
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.0e-60 235.7 235 62.6
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 8.6e-55 218.0 130 84.6
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.8e-53 213.0 244 49.6
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.2e-51 207.6 120 89.2
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.7e-50 203.8 244 50.0
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 7.0e-49 198.4 138 79.7
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.8e-44 183.7 118 83.1
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 9.8e-43 177.9 179 57.5
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.6e-35 153.3 127 67.7
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 4.4e-35 152.5 191 51.3
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 5.8e-27 125.6 96 66.7
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.4e-25 120.2 69 89.9


User provided reference genes

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