Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.6e-310 1068.5 520 100.0
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.2e-281 972.6 520 90.2
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 8.4e-280 966.5 520 88.8
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 1.6e-275 952.2 520 86.7
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.3e-272 942.6 519 88.4
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 2.2e-272 941.8 520 86.0
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 2.5e-271 938.3 520 86.0
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 4.2e-271 937.6 520 86.0
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 5.5e-271 937.2 520 86.0
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 4.6e-270 934.1 521 85.8
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 4.6e-270 934.1 515 86.2
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 7.9e-270 933.3 518 85.7
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 8.8e-269 929.9 523 84.7
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 5.7e-268 927.2 523 84.5
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 5.7e-268 927.2 518 85.1
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.7e-268 926.4 523 84.3
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 1.7e-267 925.6 520 84.8
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.8e-267 924.9 518 85.1
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.8e-267 924.9 518 85.1
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 8.2e-267 923.3 523 83.9
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.5e-265 919.1 520 84.2
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 1.7e-264 915.6 518 84.9
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 2.5e-263 911.8 520 82.9
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 3.2e-263 911.4 518 84.4
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 4.2e-263 911.0 516 84.5
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 4.2e-263 911.0 520 83.5
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 9.4e-263 909.8 518 84.6
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.1e-262 908.7 543 80.8
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 2.7e-262 908.3 544 80.5
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.6e-262 907.9 520 82.5
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 6.7e-261 903.7 520 81.7
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 2.0e-260 902.1 521 82.7
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 2.6e-260 901.7 521 82.7
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.6e-260 901.7 516 82.8
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 4.4e-260 901.0 518 83.8
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 7.4e-260 900.2 518 82.6
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 9.7e-260 899.8 516 83.1
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 2.8e-259 898.3 521 80.6
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 2.8e-259 898.3 513 83.0
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.7e-259 897.9 520 81.7
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.7e-259 897.9 520 82.3
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 3.7e-259 897.9 520 82.3
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 4.8e-259 897.5 519 82.3
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 8.2e-259 896.7 520 81.7
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 2.4e-258 895.2 521 80.8
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 2.4e-258 895.2 520 81.0
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 3.1e-258 894.8 521 82.1
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.1e-258 894.8 520 81.0
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 4.1e-258 894.4 520 82.9
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 4.1e-258 894.4 520 82.9
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 9.1e-258 893.3 521 81.2
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 1.5e-257 892.5 521 82.0
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 2.0e-257 892.1 521 80.8
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.6e-257 891.7 518 80.9
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 3.5e-257 891.3 517 82.4
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 4.5e-257 891.0 518 83.0
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 5.9e-257 890.6 520 80.6
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 6.5e-256 887.1 530 80.6
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.9e-255 885.6 520 81.2
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 2.5e-255 885.2 519 80.5
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 5.5e-255 884.0 521 80.4
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 5.5e-255 884.0 521 80.4
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 5.5e-255 884.0 521 81.8
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 7.2e-255 883.6 521 80.4
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 7.2e-255 883.6 521 80.4
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 7.2e-255 883.6 520 81.0
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 1.2e-254 882.9 520 81.3
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 2.1e-254 882.1 521 80.0
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 3.6e-254 881.3 518 80.7
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 3.6e-254 881.3 518 80.7
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 3.6e-254 881.3 520 81.2
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 4.7e-254 880.9 521 80.6
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 8.0e-254 880.2 521 80.0
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 8.0e-254 880.2 521 80.6
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 1.8e-253 879.0 519 80.7
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 2.3e-253 878.6 516 81.8
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 3.0e-253 878.2 520 80.8
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 6.7e-253 877.1 518 80.9
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 8.8e-253 876.7 526 78.5
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 1.1e-252 876.3 521 79.7
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.6e-252 875.2 520 79.0
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 2.6e-252 875.2 520 79.2
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 4.4e-252 874.4 518 80.5
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 4.4e-252 874.4 518 80.5
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.4e-252 874.4 515 81.6
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 5.7e-252 874.0 518 80.7
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 7.4e-252 873.6 517 80.7
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.7e-251 872.5 518 80.1
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 3.7e-251 871.3 522 80.1
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.8e-251 870.9 554 76.7
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 1.4e-250 869.4 520 81.2
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 1.6e-249 865.9 466 88.6
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 1.3e-248 862.8 516 80.8
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 1.5e-247 859.4 517 78.1
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 7.2e-247 857.1 492 83.3
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 2.1e-246 855.5 530 77.5
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 8.0e-246 853.6 464 87.3
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 1.4e-245 852.8 520 78.8
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 1.2e-244 849.7 520 78.5
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 5.7e-244 847.4 524 78.1
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 1.3e-243 846.3 511 78.1
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 1.1e-242 843.2 522 77.4
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.8e-242 842.4 517 78.1
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 3.1e-242 841.6 522 77.4
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 4.1e-242 841.3 466 86.3
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 4.5e-241 837.8 519 76.1
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 1.7e-240 835.9 467 84.4
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 2.9e-240 835.1 520 78.5
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 3.8e-240 834.7 518 78.2
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 2.5e-239 832.0 519 75.7
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 4.2e-239 831.2 472 82.2
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 5.2e-237 824.3 519 75.7
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 5.2e-237 824.3 520 77.1
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.7e-235 819.3 515 77.1
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 4.8e-235 817.8 490 80.6
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 4.8e-235 817.8 521 74.9
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 5.4e-234 814.3 469 83.4
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 5.4e-234 814.3 512 75.6
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 1.6e-233 812.8 553 72.7
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 1.6e-233 812.8 512 75.6
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.3e-232 809.7 520 75.6
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.7e-232 809.3 519 74.8
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.7e-232 809.3 470 81.1
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 1.5e-231 806.2 516 74.4
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.9e-231 805.8 473 81.6
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 2.8e-230 802.0 520 74.2
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.8e-229 799.3 520 74.0
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 7.5e-228 793.9 573 68.8
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 4.1e-226 788.1 550 71.5
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 6.6e-224 780.8 520 73.5
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 8.6e-224 780.4 561 70.9
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 1.9e-223 779.2 520 72.7
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.5e-223 778.9 520 72.7
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 3.3e-223 778.5 519 72.6
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.3e-219 766.5 520 72.9
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 6.4e-219 764.2 518 70.5
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 2.0e-212 742.7 520 69.4
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 1.7e-211 739.6 540 68.0
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 2.1e-209 732.6 520 68.8
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.2e-206 723.4 496 73.8
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 6.2e-206 721.1 519 69.2
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 5.1e-200 701.4 377 87.0
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.9e-191 672.9 380 83.9
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 1.8e-189 666.4 382 83.2
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 9.0e-189 664.1 481 68.2
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 4.9e-187 658.3 561 62.0
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.0e-184 650.6 480 68.8
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 8.1e-174 614.4 482 61.2
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 5.5e-170 601.7 446 63.2
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 5.5e-162 575.1 472 59.7
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 3.2e-154 549.3 471 57.7
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 7.7e-148 528.1 352 73.6
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 1.0e-139 501.1 293 81.9
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 9.7e-135 484.6 289 81.3
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.4e-133 479.9 265 83.4
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 1.2e-132 477.6 286 78.3
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 8.5e-131 471.5 288 79.5
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.1e-130 471.1 291 78.7
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.7e-107 394.0 250 73.6
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 3.3e-106 389.8 244 76.6
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.6e-81 306.6 204 71.6
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 5.1e-59 233.0 132 82.6
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 9.6e-58 228.8 477 32.3
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 1.6e-52 211.5 477 31.0
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.5e-42 178.3 203 50.7
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.4e-39 167.2 135 57.0
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 7.2e-37 159.5 109 68.8
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 3.9e-27 127.1 86 70.9
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 1.5e-21 108.6 59 83.1
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 4.2e-21 107.1 60 80.0
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.2e-20 105.5 142 49.3
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 4.8e-17 93.6 159 36.5
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.1e-12 78.2 165 37.0
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 8.3e-09 66.2 55 61.8
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 3.5e-07 60.8 37 75.7
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 4.5e-07 60.5 47 61.7


User provided reference genes

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