Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003165 Carpinus fangiana HOM05D004751 ORTHO05D005819 0.0e+00 2947.1 1505 100.0
Haze_25834 Corylus avellana HOM05D004751 ORTHO05D005819 0.0e+00 2881.7 1550 95.5
QL02p040907 Quercus lobata HOM05D004751 ORTHO05D005819 0.0e+00 2632.1 1549 87.3
RcHm_v2.0_Chr1g0331571 Rosa chinensis HOM05D004751 ORTHO05D005819 0.0e+00 2414.4 1557 79.1
Prupe.2G065200 Prunus persica HOM05D004751 ORTHO05D005819 0.0e+00 2394.0 1557 79.1
MD07G1058300 Malus domestica HOM05D004751 ORTHO05D005819 0.0e+00 2380.5 1557 78.7
Thecc.09G099100 Theobroma cacao HOM05D004751 ORTHO05D005819 0.0e+00 2367.0 1564 77.5
MD02G1262100 Malus domestica HOM05D004751 ORTHO05D005819 0.0e+00 2366.3 1557 78.6
FvH4_7g05110 Fragaria vesca HOM05D004751 ORTHO05D005819 0.0e+00 2364.7 1555 77.7
FAN06G4551 Fragaria x ananassa HOM05D004751 ORTHO05D005819 0.0e+00 2361.6 1559 77.7
Duzib150G1241 Durio zibethinus HOM05D004751 ORTHO05D005819 0.0e+00 2358.6 1555 77.2
Atru.chr7.1477 Acer truncatum HOM05D004751 ORTHO05D005819 0.0e+00 2346.2 1556 77.6
FAN01G0060 Fragaria x ananassa HOM05D004751 ORTHO05D005819 0.0e+00 2343.9 1555 77.4
Manes.16G108000 Manihot esculenta HOM05D004751 ORTHO05D005819 0.0e+00 2343.9 1556 78.1
Dinv42256 Davidia involucrata HOM05D004751 ORTHO05D005819 0.0e+00 2330.8 1556 77.1
CANSAT56G3494 Cannabis sativa HOM05D004751 ORTHO05D005819 0.0e+00 2312.3 1563 76.2
Ciclev10007242m.g Citrus clementina HOM05D004751 ORTHO05D005819 0.0e+00 2305.8 1556 76.5
Gohir.D05G027800 Gossypium hirsutum HOM05D004751 ORTHO05D005819 0.0e+00 2300.8 1564 75.7
Gorai.009G028000 Gossypium raimondii HOM05D004751 ORTHO05D005819 0.0e+00 2300.4 1564 75.6
Gohir.A05G026300 Gossypium hirsutum HOM05D004751 ORTHO05D005819 0.0e+00 2295.0 1564 75.4
CSS0026223 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 0.0e+00 2291.2 1550 76.1
CSS0000434 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 0.0e+00 2290.4 1550 76.1
ClCG03G016070 Citrullus lanatus HOM05D004751 ORTHO05D005819 0.0e+00 2263.0 1561 75.3
TWI34G0109 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 0.0e+00 2250.7 1555 74.9
Glyma.07G125200 Glycine max HOM05D004751 ORTHO05D005819 0.0e+00 2249.6 1555 75.0
CsaV3_1G039890 Cucumis sativus L. HOM05D004751 ORTHO05D005819 0.0e+00 2246.9 1555 74.5
Potri.006G153100 Populus trichocarpa HOM05D004751 ORTHO05D005819 0.0e+00 2245.3 1555 75.6
Sabra06G0121300 Salix brachista HOM05D004751 ORTHO05D005819 0.0e+00 2237.6 1555 75.3
Glyma.01G006600 Glycine max HOM05D004751 ORTHO05D005819 0.0e+00 2237.2 1555 74.7
Sed0000923 Sechium edule HOM05D004751 ORTHO05D005819 0.0e+00 2235.7 1560 74.5
Actinidia17515 Actinidia chinensis HOM05D004751 ORTHO05D005819 0.0e+00 2234.1 1555 73.8
MELO3C015420.2 Cucumis melo HOM05D004751 ORTHO05D005819 0.0e+00 2233.8 1551 74.3
Lj2g0020264 Lotus japonicus HOM05D004751 ORTHO05D005819 0.0e+00 2228.0 1555 75.3
TPR.G31000 Trifolium pratense HOM05D004751 ORTHO05D005819 0.0e+00 2218.7 1556 74.4
Medtr6g088835 Medicago truncatula HOM05D004751 ORTHO05D005819 0.0e+00 2218.0 1556 74.9
Psat1g048040 Pisum sativum HOM05D004751 ORTHO05D005819 0.0e+00 2217.6 1556 74.4
VMungo0464G0426 Vigna mungo HOM05D004751 ORTHO05D005819 0.0e+00 2214.5 1555 74.0
TAR626G1784 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 2206.0 1567 73.8
TAR639G0003 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 2206.0 1567 73.8
arahy.Tifrunner.gnm1.ann1.11NKIJ Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 2205.3 1556 74.1
Lalb_Chr14g0371941 Lupinus albus HOM05D004751 ORTHO05D005819 0.0e+00 2202.9 1555 74.0
TWI32G0016 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 0.0e+00 2196.8 1555 74.0
Ca_25582_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 0.0e+00 2181.0 1556 73.3
vmacro10847 Vaccinium macrocarpon HOM05D004751 ORTHO05D005819 0.0e+00 2174.8 1562 72.7
TAR383G0360 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 2164.8 1567 72.0
Phvul.004G175100 Phaseolus vulgaris HOM05D004751 ORTHO05D005819 0.0e+00 2145.5 1555 72.3
Hma1.2p1_0012F.1_g007400 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 0.0e+00 2144.0 1556 72.8
DCAR_028653 Daucus carota HOM05D004751 ORTHO05D005819 0.0e+00 2129.8 1556 71.6
Rhsim05G0038900 Rhododendron simsii HOM05D004751 ORTHO05D005819 0.0e+00 2124.4 1555 71.6
Cc06_g10590 Coffea canephora HOM05D004751 ORTHO05D005819 0.0e+00 2111.6 1555 70.6
EL10Ac8g18369 Beta vulgaris HOM05D004751 ORTHO05D005819 0.0e+00 2107.0 1555 70.0
PGSC0003DMG400023589 Solanum tuberosum HOM05D004751 ORTHO05D005819 0.0e+00 2102.4 1556 70.3
Sopen04g006260 Solanum pennellii HOM05D004751 ORTHO05D005819 0.0e+00 2098.6 1556 70.1
Peaxi162Scf01157g00011 Petunia axillaris HOM05D004751 ORTHO05D005819 0.0e+00 2079.3 1567 69.5
CAN.G787.12 Capsicum annuum HOM05D004751 ORTHO05D005819 0.0e+00 2077.4 1556 69.9
Lj7C667T4 Lonicera japonica HOM05D004751 ORTHO05D005819 0.0e+00 2077.4 1575 70.5
Migut.K00548 Erythranthe guttata HOM05D004751 ORTHO05D005819 0.0e+00 2062.0 1557 68.6
THA.LOC104814595 Tarenaya hassleriana HOM05D004751 ORTHO05D005819 0.0e+00 2045.8 1561 69.1
PSO210G2464 Papaver somniferum HOM05D004751 ORTHO05D005819 0.0e+00 2041.9 1559 70.0
PSO210G3406 Papaver somniferum HOM05D004751 ORTHO05D005819 0.0e+00 2040.8 1559 69.9
PGR102G2506 Punica granatum HOM05D004751 ORTHO05D005819 0.0e+00 2040.4 1552 70.5
MBI15_g07764_MAGBIO Magnolia biondii HOM05D004751 ORTHO05D005819 0.0e+00 2040.0 1564 68.7
AUR62010880 Chenopodium quinoa HOM05D004751 ORTHO05D005819 0.0e+00 2038.8 1561 68.0
SalBow1G2004 Salvia bowleyana HOM05D004751 ORTHO05D005819 0.0e+00 2033.5 1573 67.3
GSVIVG01015287001 Vitis vinifera HOM05D004751 ORTHO05D005819 0.0e+00 2026.9 1550 70.5
Solyc04g012170.4 Solanum lycopersicum HOM05D004751 ORTHO05D005819 0.0e+00 2025.4 1556 68.3
SGA_v2.0_scaffold19G08722 Striga asiatica HOM05D004751 ORTHO05D005819 0.0e+00 2008.4 1558 67.0
Aqoxy7G03607 Aquilegia oxysepala HOM05D004751 ORTHO05D005819 0.0e+00 2003.0 1564 68.1
AL7G23020 Arabidopsis lyrata HOM05D004751 ORTHO05D005819 0.0e+00 2003.0 1556 67.4
arahy.Tifrunner.gnm1.ann1.YRLX64 Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 2002.6 1555 66.8
AT4G29380 Arabidopsis thaliana HOM05D004751 ORTHO05D005819 0.0e+00 2002.3 1556 67.4
MSTRG.26388 Avicennia marina HOM05D004751 ORTHO05D005819 0.0e+00 2000.3 1555 67.3
arahy.Tifrunner.gnm1.ann1.9BR2YY Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1989.5 1555 66.6
Sp7g27250 Schrenkiella parvula HOM05D004751 ORTHO05D005819 0.0e+00 1988.8 1551 66.9
Aa31LG2G21070 Aethionema arabicum HOM05D004751 ORTHO05D005819 0.0e+00 1985.7 1555 67.5
AUR62021393 Chenopodium quinoa HOM05D004751 ORTHO05D005819 0.0e+00 1983.4 1518 68.2
Carub.0007s1117 Capsella rubella HOM05D004751 ORTHO05D005819 0.0e+00 1982.2 1556 67.0
Thhalv10024212m.g Eutrema salsugineum HOM05D004751 ORTHO05D005819 0.0e+00 1978.8 1555 66.9
Lsat_1_v5_gn_7_39580 Lactuca sativa HOM05D004751 ORTHO05D005819 0.0e+00 1954.9 1555 67.6
Hund26286 Selenicereus undatus HOM05D004751 ORTHO05D005819 0.0e+00 1954.5 1495 67.4
C01p10120 Brassica napus HOM05D004751 ORTHO05D005819 0.0e+00 1952.9 1551 66.6
BolC1t00970H Brassica oleracea HOM05D004751 ORTHO05D005819 0.0e+00 1944.1 1551 66.3
Eucgr.C03719 Eucalyptus grandis HOM05D004751 ORTHO05D005819 0.0e+00 1942.5 1427 71.6
A01p08650 Brassica napus HOM05D004751 ORTHO05D005819 0.0e+00 1940.2 1551 66.2
BraA01t00815Z Brassica rapa HOM05D004751 ORTHO05D005819 0.0e+00 1939.1 1551 66.2
COL.COLO4_34728 Corchorus olitorius HOM05D004751 ORTHO05D005819 0.0e+00 1926.0 1365 74.2
Oeu021455.1 Olea europaea HOM05D004751 ORTHO05D005819 0.0e+00 1883.6 1497 66.7
HanXRQChr03g0061061 Helianthus annuus HOM05D004751 ORTHO05D005819 0.0e+00 1873.6 1565 65.8
Sc08g0008060 Simmondsia chinensis HOM05D004751 ORTHO05D005819 0.0e+00 1862.0 1475 67.2
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 0.0e+00 1853.6 1515 66.5
Ah.09g230480 Amaranthus hybridus HOM05D004751 ORTHO05D005819 0.0e+00 1835.8 1462 66.1
arahy.Tifrunner.gnm1.ann1.U02M06 Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1810.0 1284 74.1
BcaC09g51723 Brassica carinata HOM05D004751 ORTHO05D005819 0.0e+00 1765.7 1547 62.2
Oeu018580.2 Olea europaea HOM05D004751 ORTHO05D005819 0.0e+00 1745.3 1588 60.6
unitig_8.g4485 Utricularia gibba HOM05D004751 ORTHO05D005819 0.0e+00 1741.1 1560 61.0
ATR0730G043 Amborella trichopoda HOM05D004751 ORTHO05D005819 0.0e+00 1578.9 1564 56.9
Cpa.g.sc78.25 Carica papaya HOM05D004751 ORTHO05D005819 0.0e+00 1569.3 1577 56.9
CARHR237190 Cardamine hirsuta HOM05D004751 ORTHO05D005819 0.0e+00 1443.3 1182 65.3
Zm00001eb257890 Zea mays HOM05D004751 ORTHO05D005819 0.0e+00 1414.1 1577 52.4
Hund09091 Selenicereus undatus HOM05D004751 ORTHO05D005819 0.0e+00 1351.7 1457 53.4
Nitab4.5_0004673g0040 Nicotiana tabacum HOM05D004751 ORTHO05D005819 0.0e+00 1265.0 940 71.6
Zm00001eb192340 Zea mays HOM05D004751 ORTHO05D005819 0.0e+00 1227.6 1380 51.2
Nitab4.5_0001242g0100 Nicotiana tabacum HOM05D004751 ORTHO05D005819 0.0e+00 1213.0 1460 48.0
Pp3c9_3860 Physcomitrium patens HOM05D004751 ORTHO05D005819 0.0e+00 1186.8 1781 43.2
Pp3c15_10000 Physcomitrium patens HOM05D004751 ORTHO05D005819 0.0e+00 1180.2 1793 42.7
AagrBONN_evm.TU.Sc2ySwM_228.4976 Anthoceros agrestis HOM05D004751 ORTHO05D005819 0.0e+00 1077.8 1857 40.1
Mapoly0002s0158 Marchantia polymorpha HOM05D004751 ORTHO05D005819 1.0e-311 1074.7 1646 41.6
SMO347G0104 Selaginella moellendorffii HOM05D004751 ORTHO05D005819 1.3e-304 1050.4 1574 42.9
SHI02649 Sapria himalayana HOM05D004751 ORTHO05D005819 4.3e-292 1008.8 1057 54.6
SEGI_30648 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 4.2e-287 992.3 1336 47.5
CDE04G1922 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 1.5e-281 973.8 836 61.6
Ca_25584_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 2.6e-273 946.4 734 68.9
Dinv36677 Davidia involucrata HOM05D004751 ORTHO05D005819 3.5e-225 786.6 541 73.8
CDE04G0916 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 9.2e-178 629.0 596 57.7
CBR_g47981 Chara braunii HOM05D004751 ORTHO05D005819 1.9e-175 621.3 2545 26.4
RcHm_v2.0_Chr1g0332501 Rosa chinensis HOM05D004751 ORTHO05D005819 2.4e-173 614.4 685 52.8
Dinv36676 Davidia involucrata HOM05D004751 ORTHO05D005819 1.7e-171 608.2 462 74.7
Os02g0796700 Oryza sativa ssp. japonica HOM05D004751 ORTHO05D005819 6.9e-157 559.7 469 60.8
Dinv36675 Davidia involucrata HOM05D004751 ORTHO05D005819 4.3e-143 513.8 390 68.2
Ca_25581_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 1.8e-141 508.4 595 48.6
FAN03G2869 Fragaria x ananassa HOM05D004751 ORTHO05D005819 9.7e-135 486.1 349 71.1
Nitab4.5_0015727g0010 Nicotiana tabacum HOM05D004751 ORTHO05D005819 9.7e-135 486.1 306 73.2
PRCOL_00004168 Prasinoderma coloniale HOM05D004751 ORTHO05D005819 1.1e-117 429.5 1778 26.0
Lsat_1_v5_gn_0_39700 Lactuca sativa HOM05D004751 ORTHO05D005819 2.0e-108 398.7 271 72.3
CiPaw.03G223300 Carya illinoinensis HOM05D004751 ORTHO05D005819 5.9e-108 397.1 221 88.2
Hma1.2p1_0386F.1_g141720 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 9.8e-95 353.2 240 77.5
Cre06.g290500 Chlamydomonas reinhardtii HOM05D004751 ORTHO05D005819 2.3e-88 332.0 2158 22.8
RcHm_v2.0_Chr1g0332481 Rosa chinensis HOM05D004751 ORTHO05D005819 2.4e-85 322.0 196 78.1
CiPaw.03G223200 Carya illinoinensis HOM05D004751 ORTHO05D005819 6.2e-81 307.4 156 92.9
SHI02646 Sapria himalayana HOM05D004751 ORTHO05D005819 2.4e-69 268.9 164 80.5
SEGI_14388 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 3.9e-67 261.5 157 77.7
C07p57020 Brassica napus HOM05D004751 ORTHO05D005819 2.5e-58 232.3 224 56.7
BcaB08g34921 Brassica carinata HOM05D004751 ORTHO05D005819 6.9e-56 224.2 190 61.1
A01p08660 Brassica napus HOM05D004751 ORTHO05D000206 2.9e-54 218.8 233 53.2
MCO11G423 Micromonas commoda HOM05D004751 ORTHO05D005819 4.0e-48 198.4 345 36.5
COL.COLO4_34727 Corchorus olitorius HOM05D004751 ORTHO05D005819 3.3e-42 178.7 91 93.4
Ah.09g230490 Amaranthus hybridus HOM05D004751 ORTHO05D005819 1.5e-39 169.9 91 85.7
RcHm_v2.0_Chr1g0332491 Rosa chinensis HOM05D004751 ORTHO05D005819 9.3e-37 160.6 110 73.6
ATR0661G544 Amborella trichopoda HOM05D004751 ORTHO05D005819 6.1e-20 104.8 71 62.0
RcHm_v2.0_Chr1g0332471 Rosa chinensis HOM05D004751 ORTHO05D050748 9.7e-18 97.4 56 91.1
PSO832G2682 Papaver somniferum HOM05D004751 ORTHO05D005819 1.7e-17 96.7 178 40.4
SHI02652 Sapria himalayana HOM05D004751 ORTHO05D005819 1.7e-17 96.7 94 52.1
SHI02648 Sapria himalayana HOM05D004751 ORTHO05D005819 3.7e-17 95.5 102 49.0
CDE12G0100 Ceratophyllum demersum HOM05D000087 ORTHO05D016004 1.1e-16 94.0 121 47.1
A06p04880 Brassica napus HOM05D004751 ORTHO05D005819 1.7e-14 86.7 43 93.0
BraA06t23692Z Brassica rapa HOM05D004751 ORTHO05D005819 1.7e-14 86.7 43 93.0
SHI02653 Sapria himalayana HOM05D004751 ORTHO05D050748 1.7e-14 86.7 64 67.2
C09p03160 Brassica napus HOM05D004751 ORTHO05D005819 1.1e-13 84.0 43 90.7
Ca_19974_v3 Cicer arietinum L. HOM05D004751 ORTHO05D000385 1.0e-11 77.4 75 52.0
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.8e-11 76.6 75 53.3
CiPaw.04G155500 Carya illinoinensis HOM05D004751 ORTHO05D005819 6.7e-11 74.7 62 59.7
SHI02647 Sapria himalayana HOM05D004751 ORTHO05D005819 2.2e-09 69.7 35 94.3
Actinidia39776 Actinidia chinensis HOM05D004751 ORTHO05D005819 1.8e-08 66.6 80 51.2
Gorai.010G078000 Gossypium raimondii HOM05D039740 ORTHO05D047670 2.2e-06 59.7 64 53.1
HPP92_015886 Vanilla planifolia HOM05D000084 ORTHO05D002355 2.2e-06 59.7 149 30.2
Gohir.D06G066500 Gossypium hirsutum HOM05D039740 ORTHO05D047670 8.5e-06 57.8 63 52.4


User provided reference genes

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