Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 2.4e-34 148.3 76 100.0
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 4.3e-31 137.5 72 95.8
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 5.0e-24 114.0 73 82.2
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 1.2e-22 109.4 75 77.3
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 1.6e-22 109.0 73 74.0
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 8.1e-22 106.7 75 72.0
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 8.1e-22 106.7 73 72.6
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 3.1e-21 104.8 74 74.3
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 6.8e-21 103.6 70 77.1
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 6.8e-21 103.6 74 73.0
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 2.0e-20 102.1 80 65.0
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 4.4e-20 100.9 72 75.0
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 4.4e-20 100.9 78 70.5
QL03p050300 Quercus lobata HOM05D007850 ORTHO05D009594 5.8e-20 100.5 74 73.0
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 9.9e-20 99.8 72 73.6
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 1.3e-19 99.4 75 73.3
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 1.3e-19 99.4 71 73.2
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 4.9e-19 97.4 78 65.4
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 4.9e-19 97.4 78 65.4
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 4.9e-19 97.4 72 72.2
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 6.4e-19 97.1 70 77.1
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 8.3e-19 96.7 72 68.1
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 8.3e-19 96.7 72 68.1
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 8.3e-19 96.7 72 68.1
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 1.4e-18 95.9 70 74.3
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.2e-18 94.7 75 68.0
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.2e-18 94.7 75 68.0
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.2e-18 94.7 75 68.0
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.2e-18 94.7 75 68.0
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 4.1e-18 94.4 78 64.1
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 4.1e-18 94.4 74 67.6
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 7.1e-18 93.6 75 66.7
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 7.1e-18 93.6 75 66.7
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 7.1e-18 93.6 75 69.3
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 9.2e-18 93.2 73 71.2
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 2.7e-17 91.7 75 69.3
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 4.6e-17 90.9 73 67.1
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 4.6e-17 90.9 73 68.5
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 4.6e-17 90.9 75 65.3
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 6.0e-17 90.5 74 67.6
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 6.0e-17 90.5 79 62.0
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 1.7e-16 89.0 73 65.8
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 3.0e-16 88.2 70 70.0
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 8.6e-16 86.7 73 65.8
TPR.G33528 Trifolium pratense HOM05D007850 ORTHO05D009594 8.6e-16 86.7 76 63.2
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 1.5e-15 85.9 79 59.5
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 1.5e-15 85.9 59 76.3
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 2.5e-15 85.1 73 67.1
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 2.5e-15 85.1 77 62.3
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 2.5e-15 85.1 78 60.3
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 2.5e-15 85.1 74 67.6
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 3.3e-15 84.7 77 63.6
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 3.3e-15 84.7 73 63.0
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 7.3e-15 83.6 73 67.1
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 1.2e-14 82.8 70 62.9
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 6.2e-14 80.5 73 57.5
AUR62021391 Chenopodium quinoa HOM05D007850 ORTHO05D009594 1.1e-13 79.7 75 58.7
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 1.4e-13 79.3 75 58.7
Medtr6g090490 Medicago truncatula HOM05D007850 ORTHO05D009594 5.2e-13 77.4 77 59.7
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 1.2e-12 76.3 55 74.5
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 2.0e-12 75.5 72 58.3
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 4.4e-12 74.3 74 59.5
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 1.3e-11 72.8 77 54.5
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 4.9e-11 70.9 74 58.1
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 6.4e-11 70.5 76 55.3
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 6.4e-11 70.5 76 55.3
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 4.1e-10 67.8 76 57.9
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 5.4e-10 67.4 78 56.4
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 5.4e-10 67.4 78 56.4
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 9.2e-10 66.6 76 53.9
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 9.2e-10 66.6 76 52.6
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 9.2e-10 66.6 55 70.9
unitig_8.g4473 Utricularia gibba HOM05D007850 ORTHO05D009594 1.2e-09 66.2 68 54.4
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 2.1e-09 65.5 76 52.6
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 2.7e-09 65.1 76 52.6
Aqoxy7G01385 Aquilegia oxysepala HOM05D007850 ORTHO05D009594 6.0e-09 63.9 67 58.2
ATR0705G131 Amborella trichopoda HOM05D007850 ORTHO05D009594 2.3e-08 62.0 73 49.3
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 2.3e-08 62.0 73 52.1
Ah.09g230500 Amaranthus hybridus HOM05D007850 ORTHO05D009594 6.6e-08 60.5 83 50.6
CDE06G1893 Ceratophyllum demersum HOM05D007850 ORTHO05D009594 5.6e-07 57.4 48 66.7
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 1.2e-06 56.2 64 56.2
SEGI_13362 Sequoiadendron giganteum HOM05D007850 ORTHO05D009594 8.1e-06 53.5 56 50.0


User provided reference genes

Program Settings