Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 4.0e-301 1037.3 533 100.0
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 2.2e-235 818.9 426 97.2
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 3.6e-217 758.4 522 75.1
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.7e-209 731.5 537 73.4
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.0e-188 662.9 524 67.0
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.1e-170 604.0 535 60.0
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 9.6e-162 574.3 527 59.2
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 8.1e-161 571.2 555 56.4
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 9.0e-160 567.8 532 56.4
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.5e-154 550.4 530 55.1
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.5e-151 540.4 533 56.1
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.6e-151 539.7 518 56.0
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.9e-150 536.2 537 54.9
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 6.4e-150 535.0 541 54.9
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.4e-150 535.0 543 55.1
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.4e-150 535.0 543 55.1
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.4e-149 533.1 531 53.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.1e-147 525.4 536 55.4
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 5.5e-141 505.4 548 53.1
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 5.5e-141 505.4 526 52.3
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.1e-138 497.7 521 53.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.3e-138 496.1 529 52.2
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.1e-137 493.4 522 53.6
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 6.2e-137 491.9 522 52.3
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 5.3e-136 488.8 521 51.6
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.0e-134 484.6 528 51.7
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 6.5e-134 481.9 539 50.8
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 7.1e-133 478.4 519 52.6
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 8.7e-131 471.5 477 55.3
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.3e-130 469.5 520 53.3
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 4.3e-130 469.2 526 49.6
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 4.3e-130 469.2 504 52.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 7.4e-130 468.4 526 49.4
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 7.4e-130 468.4 537 50.5
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.8e-129 466.5 519 51.3
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.8e-128 463.8 528 50.9
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.3e-128 462.2 669 43.2
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.9e-127 458.8 540 50.4
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 5.9e-127 458.8 524 51.5
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 7.7e-127 458.4 521 52.0
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 8.5e-126 454.9 528 49.6
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.4e-125 454.1 563 48.1
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.5e-125 453.4 532 47.9
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 4.2e-125 452.6 519 50.7
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 5.1e-123 445.7 542 50.0
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-122 444.5 521 51.1
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.8e-121 439.1 512 49.8
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.2e-119 434.5 538 47.2
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 7.7e-119 431.8 522 46.4
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 6.7e-115 418.7 530 43.2
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 7.4e-114 415.2 543 46.4
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 5.3e-112 409.1 522 45.8
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 3.5e-111 406.4 543 45.5
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.0e-110 402.5 528 46.0
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.2e-109 399.8 541 45.1
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 4.2e-109 399.4 496 44.4
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.0e-107 394.8 523 42.6
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 2.2e-102 377.1 534 41.6
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 6.8e-99 365.5 537 41.0
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.4e-98 363.2 534 39.9
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 2.8e-97 360.1 522 44.8
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 8.3e-97 358.6 540 41.3
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 4.1e-96 356.3 511 41.9
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.6e-95 354.4 521 41.1
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 4.5e-95 352.8 540 41.9
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 3.8e-94 349.7 535 40.6
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.9e-93 347.4 539 39.7
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.4e-91 341.3 521 41.8
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.7e-89 334.3 492 42.5
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.1e-88 331.6 527 39.7
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 9.1e-88 328.6 518 40.0
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.9e-87 325.9 496 41.5
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 2.9e-86 323.6 416 45.2
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.9e-85 320.9 538 38.7
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.9e-85 320.9 501 38.3
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 9.5e-85 318.5 540 38.3
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.6e-84 316.6 502 41.2
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 6.1e-84 315.8 532 38.3
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 8.0e-84 315.5 505 37.6
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.2e-82 311.6 487 39.2
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 4.4e-82 309.7 500 37.8
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.7e-81 307.8 484 39.3
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.7e-81 307.8 481 39.7
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.8e-80 304.3 523 37.5
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 4.1e-80 303.1 288 53.8
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.0e-79 300.8 265 57.4
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 2.0e-79 300.8 265 57.4
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 3.5e-79 300.1 520 38.7
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.3e-78 297.4 505 37.0
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.6e-76 291.2 479 39.2
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 8.0e-76 288.9 523 36.5
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 1.4e-75 288.1 574 36.9
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.3e-73 281.6 550 34.7
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.2e-73 280.8 388 41.8
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 3.7e-73 280.0 522 36.6
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 8.3e-73 278.9 506 36.2
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.4e-72 278.1 396 40.9
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.4e-72 277.3 516 34.9
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 3.2e-72 276.9 292 50.7
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.2e-71 275.0 501 35.9
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 3.5e-71 273.5 268 53.0
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.5e-71 273.5 258 58.5
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 3.5e-71 273.5 395 39.2
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.0e-71 272.7 508 35.6
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 7.8e-71 272.3 539 36.5
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.3e-70 271.6 527 36.8
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.9e-69 267.7 473 37.8
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 3.3e-69 266.9 505 35.8
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 4.7e-68 263.1 511 34.4
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 6.2e-68 262.7 502 34.3
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 6.2e-68 262.7 539 36.0
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.3e-67 260.8 500 34.4
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-66 258.5 411 36.7
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.2e-66 258.5 526 35.6
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.6e-66 257.3 511 33.9
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.6e-66 257.3 526 35.6
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 9.8e-66 255.4 270 54.4
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.3e-65 255.0 530 34.3
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.7e-65 254.6 500 33.8
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.7e-65 254.6 500 33.8
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.2e-65 254.2 515 35.5
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 8.3e-65 252.3 568 31.5
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 2.1e-63 247.7 459 35.9
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.0e-62 245.4 489 36.4
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.0e-62 243.8 237 54.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 6.6e-62 242.7 581 33.6
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 3.3e-61 240.4 519 33.1
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 5.6e-61 239.6 527 33.6
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.2e-60 238.4 267 49.1
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 3.6e-60 236.9 251 51.0
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 4.7e-60 236.5 434 36.6
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 6.8e-59 232.6 504 32.1
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 3.4e-58 230.3 519 34.7
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 7.6e-58 229.2 294 43.5
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.3e-54 218.4 513 31.0
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.9e-54 216.9 270 47.8
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 7.3e-53 212.6 413 33.9
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 4.7e-52 209.9 518 30.9
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.4e-51 208.4 516 31.4
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.8e-51 208.0 523 31.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.4e-51 207.6 564 30.3
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.2e-50 205.3 394 33.0
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.0e-50 204.5 256 50.0
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 8.4e-49 199.1 515 29.9
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.6e-47 194.9 532 28.9
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 6.0e-47 193.0 259 46.7
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.3e-46 191.8 309 40.5
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 8.7e-46 189.1 409 33.7
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 5.6e-45 186.4 288 39.6
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 5.6e-45 186.4 540 33.1
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 2.1e-44 184.5 526 29.3
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 4.8e-44 183.3 525 29.5
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.8e-43 181.4 524 29.2
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.1e-40 172.2 528 29.2
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 2.4e-40 171.0 528 29.0
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.6e-39 168.3 264 42.4
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 4.3e-37 160.2 477 29.8
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 5.3e-35 153.3 270 38.9
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.8e-30 138.3 262 34.7
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 3.0e-30 137.5 156 45.5
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.3e-29 134.0 275 37.1
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.3e-29 133.7 256 34.8
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 9.6e-29 132.5 156 44.9
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.3e-28 132.1 192 41.1
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 8.1e-28 129.4 287 30.7
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.8e-27 128.3 128 51.6
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.0e-26 124.8 201 41.3
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.4e-26 124.0 237 36.3
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 3.2e-24 117.5 118 45.8
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 5.5e-24 116.7 256 33.2
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.7e-23 114.4 276 30.8
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 1.5e-21 108.6 144 44.4
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 2.6e-18 97.8 520 23.7
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 3.0e-14 84.3 142 37.3
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 3.3e-13 80.9 440 25.7
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 1.3e-12 79.0 140 36.4
TPR.G21889 Trifolium pratense HOM05D003538 ORTHO05D004376 1.4e-08 65.5 121 44.6
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 1.8e-06 58.5 99 38.4


User provided reference genes

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