Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 1.2e-283 979.2 500 100.0
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 3.9e-266 921.0 500 94.2
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 4.7e-227 791.2 500 81.2
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 3.3e-212 741.9 500 77.0
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 5.1e-189 664.8 501 66.5
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 5.6e-188 661.4 499 68.5
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 1.7e-181 639.8 506 64.6
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 5.6e-180 634.8 501 64.5
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 2.8e-179 632.5 501 64.3
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 1.8e-178 629.8 501 64.5
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 6.4e-176 621.3 503 63.4
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 1.6e-174 616.7 505 63.4
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.5e-172 610.1 487 63.9
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 2.5e-172 609.4 505 61.6
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 9.6e-172 607.4 487 63.4
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 1.6e-171 606.7 504 63.1
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 6.9e-170 601.3 508 60.8
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 6.9e-170 601.3 503 62.2
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 7.1e-167 591.3 510 60.6
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 7.8e-166 587.8 509 60.9
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 6.6e-165 584.7 510 61.2
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.1e-164 583.9 509 60.5
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 1.3e-163 580.5 508 60.6
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 1.5e-161 573.5 504 59.5
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 2.0e-161 573.2 502 62.0
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 2.3e-157 559.7 498 58.2
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 1.9e-156 556.6 506 57.9
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 8.4e-152 541.2 506 57.3
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 5.5e-151 538.5 431 64.0
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 3.5e-150 535.8 419 63.0
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 3.5e-150 535.8 505 57.4
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 1.3e-149 533.9 501 54.9
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 1.1e-146 524.2 505 55.4
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 1.5e-145 520.4 521 54.1
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 1.3e-144 517.3 510 54.5
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 1.7e-144 516.9 505 53.5
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 8.4e-144 514.6 506 53.6
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 3.2e-143 512.7 504 54.0
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 9.3e-143 511.1 506 53.6
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.1e-142 510.0 415 62.7
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 2.7e-142 509.6 481 54.5
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 3.5e-142 509.2 415 62.4
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 7.9e-142 508.1 526 51.7
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 3.3e-140 502.7 425 62.1
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 1.8e-138 496.9 506 54.0
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 5.3e-138 495.4 506 52.6
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 1.5e-137 493.8 507 52.3
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 2.0e-137 493.4 517 50.7
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 5.9e-137 491.9 421 61.8
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 2.2e-136 490.0 517 51.6
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 2.2e-136 490.0 517 51.8
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 1.6e-134 483.8 501 52.5
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 3.6e-134 482.6 510 50.2
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 1.0e-133 481.1 509 52.1
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 1.8e-133 480.3 506 52.8
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 3.9e-133 479.2 510 50.0
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 6.7e-133 478.4 416 58.2
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 1.1e-132 477.6 510 49.8
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 2.0e-132 476.9 510 50.0
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 4.3e-132 475.7 508 51.6
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 1.3e-131 474.2 509 51.9
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 1.4e-130 470.7 513 49.5
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 1.1e-127 461.1 527 49.5
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 3.6e-126 456.1 510 52.0
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 6.1e-126 455.3 449 52.1
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 5.5e-119 432.2 418 54.8
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 8.0e-118 428.3 513 48.5
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.1e-111 407.9 301 66.8
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 2.7e-110 403.3 461 49.2
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 3.0e-109 399.8 413 50.6
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 2.7e-105 386.7 419 50.6
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.5e-103 380.9 365 57.3
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 3.5e-97 359.8 510 43.3
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 1.2e-92 344.7 247 66.0
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 3.5e-81 306.6 560 37.0
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 1.4e-74 284.6 510 37.6
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 2.3e-72 277.3 563 34.5
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 3.1e-69 266.9 512 35.5
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 4.9e-51 206.5 166 64.5
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 7.9e-41 172.6 484 27.1
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 5.5e-34 149.8 117 64.1
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 2.1e-33 147.9 438 27.6
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 1.1e-21 109.0 250 34.4
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 9.7e-15 85.9 507 25.0
SMO302G0010 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 1.3e-06 58.9 92 37.0
SMO353G0419 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 8.2e-06 56.2 66 42.4


User provided reference genes

Program Settings