Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 2.1e-103 379.0 190 100.0
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 7.7e-98 360.5 191 93.7
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.0e-97 360.1 190 93.7
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 4.0e-94 348.2 197 89.3
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.3e-92 343.2 197 88.3
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.7e-92 342.8 193 88.1
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 2.9e-92 342.0 171 99.4
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 8.3e-92 340.5 193 88.1
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.8e-91 339.3 193 88.1
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.4e-91 339.0 194 87.6
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 9.2e-91 337.0 194 87.6
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.2e-90 336.7 194 87.1
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 2.7e-90 335.5 191 86.9
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.7e-90 335.5 194 86.6
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 5.9e-90 334.3 193 87.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 7.8e-90 334.0 190 85.8
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.0e-89 333.6 191 88.0
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.7e-89 332.8 190 84.7
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.3e-89 332.4 198 83.8
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 3.9e-89 331.6 190 84.2
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 6.6e-89 330.9 194 84.5
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 6.6e-89 330.9 198 82.8
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.5e-88 329.7 195 84.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.5e-88 329.7 194 85.6
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.5e-88 329.7 199 83.9
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.9e-88 329.3 194 83.5
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.9e-88 329.3 201 81.6
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.3e-88 328.6 191 86.4
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 3.3e-88 328.6 193 86.5
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.3e-88 328.6 192 85.4
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 5.6e-88 327.8 199 82.4
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.3e-88 327.4 192 84.9
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.8e-87 325.5 194 83.5
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 2.8e-87 325.5 194 84.0
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.6e-87 325.1 194 84.5
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.6e-87 325.1 194 84.5
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 4.7e-87 324.7 194 83.5
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 6.1e-87 324.3 192 83.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 8.0e-87 323.9 194 84.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.0e-86 323.6 190 83.2
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.0e-86 323.6 200 81.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.0e-86 323.6 200 81.0
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.4e-86 323.2 190 81.6
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 6.8e-86 320.9 200 80.5
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 8.9e-86 320.5 200 81.0
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 8.9e-86 320.5 195 82.6
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 2.0e-85 319.3 192 80.2
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 2.6e-85 318.9 194 83.5
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.6e-85 318.9 198 81.8
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 4.4e-85 318.2 197 79.7
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.8e-85 317.8 190 80.0
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.8e-85 317.8 202 81.2
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.8e-85 317.8 201 77.1
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 7.5e-85 317.4 190 80.0
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 7.5e-85 317.4 190 82.6
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 7.5e-85 317.4 201 77.1
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 9.8e-85 317.0 193 80.8
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.3e-84 316.6 201 77.6
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.7e-84 316.2 206 79.6
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.7e-84 316.2 196 79.1
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.7e-84 316.2 190 81.1
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.2e-84 315.8 198 77.8
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.9e-84 315.5 201 79.1
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.9e-84 315.5 199 77.9
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.9e-84 315.5 190 80.5
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.7e-84 315.1 203 76.4
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 4.9e-84 314.7 194 78.4
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.4e-83 313.2 190 80.0
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.9e-83 312.8 194 79.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.9e-83 312.8 213 74.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.4e-83 312.4 199 78.9
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.4e-83 312.4 190 80.0
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.4e-83 312.4 196 79.6
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.2e-83 312.0 190 80.0
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 5.4e-83 311.2 199 79.4
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 5.4e-83 311.2 203 77.8
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.4e-83 311.2 191 81.2
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.4e-83 311.2 190 80.5
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 5.4e-83 311.2 239 68.6
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 9.2e-83 310.5 190 79.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 9.2e-83 310.5 196 79.6
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.2e-82 310.1 199 77.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.2e-82 310.1 199 77.9
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.2e-82 310.1 190 78.9
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.2e-82 310.1 191 83.8
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.6e-82 309.7 204 75.0
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.0e-82 309.3 192 78.6
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 3.5e-82 308.5 199 78.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 6.0e-82 307.8 191 80.1
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 7.8e-82 307.4 193 78.8
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.0e-81 307.0 196 78.6
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.3e-81 306.6 197 78.2
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.3e-81 306.6 197 78.2
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.7e-81 306.2 193 79.3
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.7e-81 306.2 193 79.3
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 3.9e-81 305.1 191 77.0
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 5.0e-81 304.7 191 80.1
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 6.6e-81 304.3 199 75.9
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 8.6e-81 303.9 194 80.4
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.5e-80 303.1 199 76.4
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 2.5e-80 302.4 198 76.8
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 2.5e-80 302.4 196 76.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 3.3e-80 302.0 199 76.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 3.3e-80 302.0 199 76.4
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 4.3e-80 301.6 192 79.7
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 4.3e-80 301.6 194 80.4
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 7.3e-80 300.8 186 81.2
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 9.5e-80 300.4 199 75.9
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 9.5e-80 300.4 199 77.9
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.2e-79 300.1 206 72.8
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.6e-79 299.7 198 76.3
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.3e-78 295.8 198 76.8
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 4.0e-78 295.0 180 80.6
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 5.2e-78 294.7 198 75.8
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 5.2e-78 294.7 174 84.5
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 5.2e-78 294.7 223 69.5
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.5e-77 293.1 200 74.0
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 2.0e-77 292.7 200 74.0
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 2.6e-77 292.4 198 75.3
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 4.4e-77 291.6 203 73.9
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.7e-76 289.7 182 79.7
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.9e-76 288.9 175 83.4
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.7e-76 288.5 201 74.6
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 1.4e-75 286.6 212 70.8
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.9e-75 286.2 192 73.4
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.1e-74 282.7 180 78.3
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.0e-73 278.9 192 73.4
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.9e-72 276.2 193 68.9
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 5.6e-72 274.6 185 73.5
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 9.5e-72 273.9 204 69.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.6e-71 273.1 212 68.4
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 8.1e-71 270.8 192 68.8
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 3.1e-70 268.9 213 67.1
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 3.4e-69 265.4 237 62.0
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.7e-68 263.1 181 69.6
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.2e-67 258.8 184 68.5
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 6.0e-66 254.6 182 70.3
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.0e-65 253.8 187 70.1
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 2.3e-65 252.7 175 70.3
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 7.3e-64 247.7 177 71.8
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 8.1e-63 244.2 190 66.3
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 8.1e-63 244.2 198 63.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 3.5e-58 228.8 201 60.7
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 2.8e-55 219.2 153 73.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.2e-50 203.8 119 87.4
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 7.3e-48 194.5 112 85.7
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 3.6e-47 192.2 173 59.0
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 5.1e-41 171.8 101 88.1
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 5.1e-41 171.8 99 90.9
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 4.8e-39 165.2 188 54.8
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.1e-38 164.1 100 85.0
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.1e-35 154.1 97 72.2
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.1e-30 136.0 70 97.1
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 4.1e-30 135.6 193 47.2
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 5.3e-30 135.2 79 79.7
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 6.9e-30 134.8 97 73.2
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.8e-28 129.0 109 66.1
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.9e-27 126.7 70 72.9
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.5e-24 117.1 194 38.7
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 4.8e-23 112.1 186 39.2
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-22 110.9 100 66.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 6.9e-22 108.2 190 42.6
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 5.0e-20 102.1 190 41.6
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 2.1e-18 96.7 71 67.6
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 3.6e-18 95.9 70 61.4
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 5.1e-17 92.0 54 72.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 8.8e-17 91.3 63 69.8
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 1.1e-14 84.3 163 35.6
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.5e-13 80.5 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.6e-13 79.7 53 75.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 5.0e-12 75.5 60 63.3
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.9e-09 65.9 72 52.8
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.3e-06 55.5 57 57.9


User provided reference genes

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