Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 0.0e+00 1080.5 540 100.0
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 5.6e-303 1043.5 540 96.3
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 9.4e-258 893.3 541 83.9
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.8e-245 852.4 530 82.6
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 3.4e-239 831.6 566 77.0
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 8.0e-233 810.4 550 76.9
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.2e-223 780.0 535 75.1
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 5.8e-223 777.7 460 83.0
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 3.7e-222 775.0 551 73.3
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 2.4e-221 772.3 479 79.5
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 4.1e-221 771.5 533 74.9
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 9.2e-221 770.4 511 77.1
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.7e-220 768.8 517 74.7
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 2.3e-219 765.8 541 73.6
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 2.5e-218 762.3 532 73.3
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 3.3e-218 761.9 532 73.3
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 3.3e-218 761.9 537 73.0
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 4.3e-218 761.5 518 75.3
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 9.5e-218 760.4 422 86.0
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 9.5e-218 760.4 480 78.8
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.2e-217 760.0 547 72.8
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 8.1e-217 757.3 465 78.9
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 6.8e-216 754.2 545 72.1
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.2e-215 753.4 549 71.9
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 1.5e-215 753.1 542 71.6
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 2.6e-215 752.3 549 71.4
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 9.9e-215 750.4 524 71.9
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 4.9e-214 748.0 480 77.3
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.1e-213 746.9 545 71.7
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 1.4e-213 746.5 541 73.0
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 3.2e-213 745.3 517 73.3
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 7.1e-213 744.2 560 67.5
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 3.5e-212 741.9 519 72.4
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 4.6e-212 741.5 515 73.4
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 7.8e-212 740.7 450 78.9
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 7.8e-212 740.7 533 70.9
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.1e-211 738.0 532 71.4
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 6.6e-211 737.6 546 69.6
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 3.3e-210 735.3 532 71.1
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 5.6e-210 734.6 543 69.8
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 7.3e-210 734.2 538 72.7
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.1e-209 732.6 544 71.3
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 2.8e-209 732.3 473 74.8
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 1.8e-208 729.6 537 69.8
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 4.0e-208 728.4 476 76.1
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 9.0e-208 727.2 435 80.5
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 2.6e-207 725.7 461 78.3
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.8e-206 721.8 449 78.6
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 6.4e-206 721.1 491 76.0
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.9e-205 719.5 426 81.9
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 2.4e-205 719.2 500 72.2
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 4.2e-205 718.4 426 81.9
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 9.3e-205 717.2 484 76.2
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.2e-204 716.8 501 73.1
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.0e-203 713.8 426 81.5
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.3e-203 712.6 498 72.7
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 2.5e-202 709.1 500 71.0
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 1.6e-201 706.4 500 73.0
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 1.6e-201 706.4 451 75.8
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 6.2e-201 704.5 470 72.8
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 8.1e-201 704.1 525 68.0
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 6.9e-200 701.0 533 65.7
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 6.9e-200 701.0 486 71.8
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 9.0e-200 700.7 525 68.0
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.3e-198 696.8 484 70.7
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 1.7e-198 696.4 424 79.0
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 2.2e-198 696.0 630 60.3
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 8.4e-198 694.1 497 69.0
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.1e-197 693.7 491 73.5
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.1e-197 693.7 510 72.7
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.9e-197 693.0 428 78.0
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 2.4e-197 692.6 419 79.5
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.4e-197 692.6 496 68.5
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 3.2e-197 692.2 491 70.7
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.2e-197 691.8 491 74.1
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 5.4e-197 691.4 544 66.4
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 9.3e-197 690.6 491 74.1
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 3.5e-196 688.7 508 69.3
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 3.5e-196 688.7 508 69.3
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 3.5e-196 688.7 447 76.7
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 4.6e-196 688.3 541 66.5
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 4.6e-196 688.3 447 76.3
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 1.0e-195 687.2 510 69.2
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 1.0e-195 687.2 510 69.2
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 3.0e-195 685.6 526 68.1
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.1e-194 683.7 501 72.7
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 1.1e-194 683.7 530 66.8
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.9e-194 682.9 488 70.3
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.9e-194 682.9 488 70.3
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 3.3e-194 682.2 533 67.5
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 4.3e-194 681.8 512 68.9
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 7.4e-194 681.0 509 69.4
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 7.4e-194 681.0 509 69.4
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 2.8e-193 679.1 508 69.7
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 2.8e-193 679.1 509 68.8
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 2.8e-193 679.1 531 67.6
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 4.8e-193 678.3 515 67.8
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.8e-193 678.3 491 73.7
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 4.8e-193 678.3 421 77.7
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 8.1e-193 677.6 543 65.4
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.7e-190 669.8 511 71.4
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.9e-190 669.1 599 61.3
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.1e-188 662.9 420 74.5
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 3.5e-188 662.1 545 65.5
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.6e-185 653.3 553 63.5
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 8.2e-185 651.0 439 74.3
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 3.1e-184 649.0 442 73.3
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.2e-183 647.1 440 74.1
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 8.4e-182 641.0 514 66.9
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 2.5e-178 629.4 473 70.6
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 2.2e-177 626.3 536 63.4
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 4.8e-177 625.2 526 62.5
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.1e-176 624.0 431 68.0
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 6.1e-172 608.2 628 56.5
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 1.8e-171 606.7 370 75.7
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 2.3e-171 606.3 355 81.7
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 5.7e-170 601.7 520 63.5
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 2.2e-169 599.7 504 58.7
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.5e-167 593.6 575 59.0
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 1.7e-166 590.1 544 60.8
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 8.5e-166 587.8 513 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.1e-165 587.4 484 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 9.4e-165 584.3 422 64.2
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 6.1e-164 581.6 417 68.6
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 8.8e-163 577.8 542 56.3
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.6e-162 576.2 407 70.5
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 7.4e-162 574.7 463 63.5
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.1e-160 570.9 530 58.7
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.1e-160 570.9 476 64.9
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 4.1e-160 568.9 502 60.0
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.0e-155 554.3 407 71.3
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 3.0e-155 552.7 362 75.7
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 3.9e-155 552.4 368 72.8
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 4.8e-153 545.4 562 57.3
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.8e-152 543.5 469 63.3
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.7e-146 521.2 417 64.3
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 3.1e-144 516.2 362 71.8
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 7.0e-144 515.0 454 61.9
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.2e-143 514.2 430 64.9
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 4.5e-143 512.3 352 73.3
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 4.5e-143 512.3 360 69.2
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.0e-142 511.1 487 56.9
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.5e-141 506.5 346 72.5
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 9.8e-138 494.6 412 63.3
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 1.0e-126 458.0 397 64.0
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.3e-125 453.0 348 62.9
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 5.2e-123 445.7 406 60.6
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 2.0e-119 433.7 284 75.0
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 3.4e-106 389.8 210 86.7
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.8e-99 367.5 434 45.6
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 1.2e-79 301.6 149 91.9
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.8e-78 297.7 284 58.5
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.3e-78 297.4 236 66.1
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 9.9e-74 282.0 339 54.6
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 4.9e-73 279.6 226 69.9
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.9e-69 267.7 155 82.6
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.2e-66 258.5 193 62.2
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.1e-63 247.7 468 39.1
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 2.5e-61 240.7 160 64.4
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 5.3e-59 233.0 214 61.7
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 9.0e-59 232.3 406 34.2
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 7.2e-56 222.6 463 32.8
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 8.8e-46 189.1 106 80.2
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.1e-19 102.4 229 31.4
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 1.4e-19 102.1 53 86.8
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 3.1e-19 100.9 181 32.6
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 3.1e-19 100.9 54 85.2
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 9.1e-19 99.4 49 89.8
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 1.2e-15 89.0 156 42.3
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 4.4e-13 80.5 63 54.0
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 7.0e-11 73.2 106 42.5
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.3e-09 68.2 39 82.1
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 9.5e-08 62.8 42 69.0
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 8.0e-07 59.7 40 70.0


User provided reference genes

Program Settings