Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 4.5e-198 694.5 380 100.0
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 1.7e-168 596.3 383 83.0
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 1.7e-168 596.3 383 83.0
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 2.4e-167 592.4 369 86.7
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 1.6e-166 589.7 390 81.3
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.6e-166 589.7 385 82.6
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 4.6e-166 588.2 385 85.2
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.1e-163 579.3 386 80.1
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.1e-163 579.3 386 80.1
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 4.7e-163 578.2 386 80.1
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 8.1e-163 577.4 367 84.2
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 3.1e-162 575.5 383 79.9
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 4.0e-162 575.1 385 81.3
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 4.0e-162 575.1 386 79.8
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.2e-161 573.5 331 85.5
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 2.0e-161 572.8 366 84.2
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 3.4e-161 572.0 382 83.8
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 9.9e-161 570.5 385 80.5
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.2e-160 569.3 331 85.2
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 6.4e-160 567.8 378 80.7
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 8.3e-160 567.4 389 75.1
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.4e-159 566.6 352 84.9
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.4e-159 566.6 387 80.1
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.4e-159 565.8 352 84.7
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 2.4e-159 565.8 385 80.5
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 3.2e-159 565.5 380 79.2
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.4e-159 564.7 352 84.9
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 2.7e-158 562.4 386 78.2
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 2.7e-158 562.4 383 82.8
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.0e-157 560.5 347 85.0
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 1.7e-157 559.7 335 83.0
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 3.9e-157 558.5 378 79.4
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.9e-157 558.5 378 79.4
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 5.1e-157 558.1 307 87.6
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 8.6e-157 557.4 358 79.1
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 8.6e-157 557.4 358 79.3
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 8.6e-157 557.4 361 83.1
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 1.1e-156 557.0 378 78.8
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.5e-156 556.6 306 87.3
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 1.9e-156 556.2 380 79.5
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 5.6e-156 554.7 312 84.9
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 7.3e-156 554.3 361 80.6
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 9.5e-156 553.9 359 80.5
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 9.5e-156 553.9 360 83.9
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 1.6e-155 553.1 407 78.9
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 1.6e-155 553.1 353 82.2
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 2.1e-155 552.7 363 80.7
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 4.7e-155 551.6 365 81.1
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 4.7e-155 551.6 365 81.1
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 4.7e-155 551.6 387 74.2
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 4.7e-155 551.6 306 85.6
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 6.2e-155 551.2 377 76.7
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.1e-154 550.4 385 73.0
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 2.4e-154 549.3 386 78.0
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 5.2e-154 548.1 365 80.5
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 6.8e-154 547.7 372 82.0
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 6.8e-154 547.7 382 76.4
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 6.8e-154 547.7 384 74.0
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 8.9e-154 547.4 364 82.7
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 8.9e-154 547.4 333 81.4
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 8.9e-154 547.4 365 80.5
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 1.2e-153 547.0 386 72.3
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 1.5e-153 546.6 387 76.5
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 2.6e-153 545.8 384 78.1
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.6e-153 545.8 372 78.5
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 4.4e-153 545.0 367 80.7
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 4.4e-153 545.0 364 82.7
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 4.4e-153 545.0 364 82.7
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 4.4e-153 545.0 385 72.5
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 4.4e-153 545.0 372 78.2
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 5.8e-153 544.7 383 73.6
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 7.6e-153 544.3 385 78.2
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 9.9e-153 543.9 369 79.4
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 1.3e-152 543.5 362 79.0
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 1.3e-152 543.5 368 79.3
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 1.7e-152 543.1 397 76.1
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 1.7e-152 543.1 327 81.7
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.2e-152 542.7 396 78.0
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 2.9e-152 542.3 383 76.2
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.9e-152 541.6 372 78.0
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 6.4e-152 541.2 371 73.3
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 1.1e-151 540.4 305 85.6
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 1.1e-151 540.4 389 74.0
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 7.1e-151 537.7 365 75.6
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 7.1e-151 537.7 384 71.1
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 9.2e-151 537.3 387 70.5
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.2e-150 537.0 383 78.9
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.6e-150 536.6 384 73.4
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.1e-150 536.2 318 83.3
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 2.1e-150 536.2 366 74.3
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.7e-150 535.8 369 77.5
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 6.0e-150 534.6 389 75.1
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 7.8e-150 534.3 385 71.9
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 1.7e-149 533.1 408 71.6
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 3.0e-149 532.3 383 71.5
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 3.9e-149 531.9 383 71.3
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 5.1e-149 531.6 360 75.6
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 5.1e-149 531.6 365 74.2
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 8.7e-149 530.8 405 67.7
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.5e-148 530.0 388 77.8
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 2.5e-148 529.3 309 84.1
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 2.5e-148 529.3 317 80.4
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 4.3e-148 528.5 313 82.7
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 9.6e-148 527.3 355 73.5
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 1.6e-147 526.6 310 81.9
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 2.1e-147 526.2 373 76.7
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 3.6e-147 525.4 306 82.4
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 3.6e-147 525.4 355 74.4
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 4.7e-147 525.0 307 82.4
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 8.1e-147 524.2 312 82.7
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 2.4e-146 522.7 362 72.9
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 4.4e-145 518.5 369 72.9
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 7.6e-145 517.7 475 63.4
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 2.9e-144 515.8 384 70.3
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.9e-144 515.8 313 79.9
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 4.9e-144 515.0 329 76.3
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 2.4e-143 512.7 286 85.7
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 1.7e-141 506.5 310 79.7
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 1.1e-140 503.8 330 77.3
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 4.3e-140 501.9 312 78.8
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 1.3e-139 500.4 297 81.5
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 1.4e-138 496.9 375 70.7
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 1.2e-137 493.8 363 69.4
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 3.4e-137 492.3 361 68.4
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 1.7e-136 490.0 269 86.2
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.2e-136 489.6 384 71.9
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 3.8e-136 488.8 326 75.2
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.4e-135 486.9 366 72.7
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 7.1e-135 484.6 384 70.8
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 8.7e-133 477.6 311 82.6
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 9.0e-130 467.6 272 82.7
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 1.3e-128 463.8 294 83.3
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 2.9e-128 462.6 308 76.3
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 6.4e-128 461.5 298 72.1
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 4.6e-126 455.3 391 61.9
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 1.1e-124 450.7 300 69.0
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.6e-123 446.8 356 69.9
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 4.9e-120 435.3 298 68.1
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.9e-119 433.3 300 68.3
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.5e-119 433.0 240 87.1
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 6.0e-118 428.3 298 67.1
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 5.7e-116 421.8 300 67.3
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 3.1e-114 416.0 379 60.9
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 4.2e-111 405.6 360 62.8
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 7.9e-110 401.4 333 60.4
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 2.3e-109 399.8 385 66.0
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 3.9e-109 399.1 221 87.3
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 4.3e-108 395.6 372 58.1
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.0e-101 374.4 240 77.1
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 5.7e-92 342.0 300 56.7
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 4.2e-87 325.9 211 70.6
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 3.1e-82 309.7 248 69.0
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 1.9e-71 273.9 150 86.7
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 8.9e-61 238.4 313 47.9
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 2.3e-56 223.8 197 57.9
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 7.5e-52 208.8 127 77.2
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.9e-42 177.6 164 57.9
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 6.0e-33 146.0 97 76.3
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 2.8e-30 137.1 301 30.9
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 3.8e-27 126.7 100 69.0
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 3.9e-24 116.7 356 27.2
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 1.3e-22 111.7 65 78.5
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 6.2e-22 109.4 282 28.0
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.3e-19 101.7 252 33.3
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 4.2e-18 96.7 81 70.4
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 5.4e-18 96.3 69 72.5
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 5.4e-18 96.3 69 72.5
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 4.6e-17 93.2 69 71.0
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.8e-16 91.3 377 24.4
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 2.5e-15 87.4 95 69.5
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 4.3e-15 86.7 59 69.5
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 1.0e-11 75.5 89 66.3
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 3.8e-11 73.6 108 36.1
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 9.3e-10 68.9 33 97.0
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 1.1e-07 62.0 49 63.3
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 1.5e-07 61.6 41 70.7
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 2.5e-07 60.8 41 68.3
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 4.3e-07 60.1 39 71.8
HanXRQChr05g0141861 Helianthus annuus HOM05D000001 ORTHO05D009862 8.2e-06 55.8 50 58.0


User provided reference genes

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