Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1953.7 1091 100.0
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1892.1 1119 95.7
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1847.8 1119 94.2
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1825.8 1091 89.9
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1722.2 1195 82.8
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1604.0 1093 78.3
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1595.9 1096 81.7
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1589.7 1094 80.5
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1583.5 1095 76.3
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1580.5 1058 78.5
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1576.6 1096 76.1
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1573.1 1082 77.4
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1564.7 1090 77.2
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1557.3 1076 76.8
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1556.6 1079 77.2
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1555.4 1095 77.6
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1553.5 1089 78.3
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1553.1 1098 78.9
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1553.1 1090 77.8
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1552.7 1105 77.5
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1549.3 1089 78.3
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1546.6 1095 78.4
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1545.8 1091 76.5
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1545.4 1088 77.5
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1545.0 1090 78.0
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1537.7 1079 76.6
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1536.9 1096 77.7
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1536.5 1076 78.3
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1534.2 1091 76.4
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1533.5 1091 78.2
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1533.5 1096 74.8
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1533.1 1091 76.8
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1533.1 1096 78.9
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1533.1 1075 76.9
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1526.1 1131 73.8
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1520.8 1093 75.7
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1520.4 1096 74.7
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1520.4 1096 74.7
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1517.3 1091 75.7
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1516.9 1095 73.7
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1513.8 1095 75.4
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1511.1 1096 75.4
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1506.5 1096 76.1
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1503.8 1115 72.3
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1500.7 1099 76.2
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1492.2 1100 71.9
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1484.9 1059 75.7
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1474.1 1096 71.8
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1472.6 1053 75.8
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1467.6 1095 71.9
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1446.8 1087 71.6
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1443.7 868 82.7
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1438.3 1095 71.3
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1436.0 1085 71.1
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1432.2 869 81.7
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1431.4 869 81.5
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1430.6 869 81.6
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1416.4 1103 73.6
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1415.6 974 73.4
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1397.5 1097 68.9
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1394.0 1097 70.0
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1390.6 1111 68.1
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1389.0 1077 70.8
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1387.1 1106 68.4
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1384.8 945 74.1
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1383.2 1086 68.9
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1377.8 1077 70.0
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1376.3 1099 68.9
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1375.5 1062 68.5
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1374.8 1092 69.9
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1373.2 945 72.3
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1372.8 945 72.9
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1372.8 1094 68.8
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1372.1 1088 67.6
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1363.6 1010 72.9
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1361.7 1028 69.6
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1359.7 976 71.1
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1356.7 869 78.1
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1351.3 945 72.1
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1351.3 945 72.1
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1350.1 945 72.0
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1350.1 945 72.0
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1348.6 1096 71.4
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1328.9 1114 66.1
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1326.2 1148 66.9
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1324.3 1126 65.7
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1316.2 929 71.5
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1312.0 1095 65.4
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1295.4 1208 60.3
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1291.2 1081 63.8
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1291.2 1054 67.9
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1270.8 1056 64.6
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1243.4 899 71.3
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1241.9 1251 56.6
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1239.2 1051 63.6
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1235.7 1070 64.0
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1232.6 1093 65.1
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1229.9 873 70.2
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1166.0 872 65.7
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1144.8 941 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1095.5 1082 57.3
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 2.9e-306 1055.4 692 76.9
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 3.8e-306 1055.0 690 77.0
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 2.2e-285 986.1 1101 54.2
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 2.0e-275 953.0 1097 54.1
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 3.5e-267 925.6 744 61.8
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 5.5e-257 891.7 546 80.6
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 6.1e-256 888.3 690 67.5
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.2e-238 830.9 627 68.1
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.9e-193 680.6 570 61.4
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 2.1e-179 634.0 522 71.1
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 3.5e-158 563.5 448 70.3
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.7e-152 544.7 318 83.6
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 1.5e-121 441.8 408 66.9
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 1.7e-120 438.3 341 62.2
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 4.3e-116 423.7 393 64.9
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.4e-106 392.1 276 83.3
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.8e-106 389.8 450 50.4
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 8.7e-93 346.3 322 57.5
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 4.5e-89 334.0 243 72.0
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 2.9e-88 331.3 233 71.2
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 3.9e-85 320.9 230 69.6
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 2.1e-83 315.1 1023 27.0
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 8.2e-75 286.6 1014 25.5
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 5.9e-65 253.8 190 65.8
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.4e-55 222.6 372 37.1
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.1e-54 218.8 145 71.0
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 2.6e-52 211.8 105 95.2
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 7.2e-47 193.7 243 51.4
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 3.0e-45 188.3 99 87.9
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.2e-43 182.2 107 83.2
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 2.4e-42 178.7 198 47.0
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.0e-42 177.2 149 61.7
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 7.2e-39 167.2 108 75.0
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.2e-38 166.4 103 74.8
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.1e-38 165.6 484 29.5
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 2.7e-38 165.2 89 87.6
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 1.2e-36 159.8 228 38.6
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 7.7e-33 147.1 150 56.0
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 7.7e-33 147.1 302 41.4
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 5.0e-32 144.4 150 55.3
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.6e-30 139.4 93 76.3
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 4.7e-30 137.9 86 82.6
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.2e-25 123.2 108 60.2
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.2e-25 123.2 108 60.2
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.2e-25 123.2 108 60.2
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.1e-22 112.5 79 67.1
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.0e-20 105.9 61 80.3
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 2.2e-19 102.4 121 45.5
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 6.3e-19 100.9 97 60.8
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.4e-18 99.8 59 78.0
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.4e-18 97.8 61 70.5
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.0e-18 97.4 119 42.0
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.0e-16 93.6 79 57.0
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.3e-16 93.2 67 65.7
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 3.9e-16 91.7 237 30.4
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.6e-16 90.9 130 40.8
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 2.5e-15 89.0 51 80.4
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.3e-15 87.4 224 34.4
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 9.5e-15 87.0 61 67.2
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 1.2e-14 86.7 47 91.5
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 1.3e-11 76.6 94 57.4
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 2.9e-11 75.5 63 60.3
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.3e-11 73.9 188 36.2
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.0e-09 67.8 51 60.8
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 7.8e-09 67.4 66 50.0
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 7.3e-07 60.8 57 54.4
SEGI_25641 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.6e-06 59.7 38 73.7
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 2.8e-06 58.9 57 52.6
Actinidia38474 Actinidia chinensis HOM05D003881 ORTHO05D004343 6.2e-06 57.8 53 69.8
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 8.1e-06 57.4 48 54.2


User provided reference genes

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