Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003006 Carpinus fangiana HOM05D005808 ORTHO05D006196 7.6e-39 163.3 80 100.0
MD05G1099800 Malus domestica HOM05D005808 ORTHO05D006196 7.0e-08 60.5 34 82.4
Potri.006G179100 Populus trichocarpa HOM05D005808 ORTHO05D006196 9.1e-08 60.1 34 79.4
Sed0024595 Sechium edule HOM05D005808 ORTHO05D006196 9.1e-08 60.1 34 79.4
Haze_19066 Corylus avellana HOM05D005808 ORTHO05D006196 1.2e-07 59.7 34 82.4
Haze_19072 Corylus avellana HOM05D005808 ORTHO05D006196 1.2e-07 59.7 34 82.4
CiPaw.15G163400 Carya illinoinensis HOM05D005808 ORTHO05D006196 2.0e-07 58.9 34 76.5
AUR62028366 Chenopodium quinoa HOM05D005808 ORTHO05D006196 2.0e-07 58.9 34 76.5
Sed0021443 Sechium edule HOM05D005808 ORTHO05D006196 2.7e-07 58.5 34 76.5
Hma1.2p1_0284F.1_g113760 Hydrangea macrophylla HOM05D005808 ORTHO05D006196 3.5e-07 58.2 34 76.5
unitig_748.g7192 Utricularia gibba HOM05D005808 ORTHO05D006196 3.5e-07 58.2 34 76.5
CSS0038851 Camellia sinensis var. sinensis HOM05D005808 ORTHO05D006196 4.5e-07 57.8 34 76.5
ClCG02G014280 Citrullus lanatus HOM05D005808 ORTHO05D006196 4.5e-07 57.8 34 76.5
MELO3C004113.2 Cucumis melo HOM05D005808 ORTHO05D006196 4.5e-07 57.8 34 76.5
CsaV3_2G007730 Cucumis sativus L. HOM05D005808 ORTHO05D006196 4.5e-07 57.8 34 76.5
MD10G1105500 Malus domestica HOM05D005808 ORTHO05D006196 4.5e-07 57.8 34 76.5
Potri.018G101700 Populus trichocarpa HOM05D005808 ORTHO05D006196 5.9e-07 57.4 34 73.5
Prupe.1G100900 Prunus persica HOM05D005808 ORTHO05D006196 5.9e-07 57.4 34 76.5
QL02p094407 Quercus lobata HOM05D005808 ORTHO05D006196 5.9e-07 57.4 34 73.5
Sabra18G0087400 Salix brachista HOM05D005808 ORTHO05D006196 5.9e-07 57.4 34 73.5
CANSAT11G2252 Cannabis sativa HOM05D005808 ORTHO05D006196 7.7e-07 57.0 34 76.5
Glyma.09G280100 Glycine max HOM05D005808 ORTHO05D006196 7.7e-07 57.0 34 73.5
Phvul.008G090200 Phaseolus vulgaris HOM05D005808 ORTHO05D006196 7.7e-07 57.0 34 73.5
Sc18g0003190 Simmondsia chinensis HOM05D005808 ORTHO05D006196 7.7e-07 57.0 34 73.5
Cpa.g.sc43.20 Carica papaya HOM05D005808 ORTHO05D006196 1.0e-06 56.6 33 75.8
Eucgr.C01236 Eucalyptus grandis HOM05D005808 ORTHO05D006196 1.0e-06 56.6 33 75.8
Manes.04G001000 Manihot esculenta HOM05D005808 ORTHO05D006196 1.0e-06 56.6 34 70.6
PSO063G5527 Papaver somniferum HOM05D005808 ORTHO05D006196 1.0e-06 56.6 34 73.5
PSO782G2734 Papaver somniferum HOM05D005808 ORTHO05D006196 1.0e-06 56.6 34 73.5
PGR102G1617 Punica granatum HOM05D005808 ORTHO05D006196 1.0e-06 56.6 34 73.5
RcHm_v2.0_Chr4g0405311 Rosa chinensis HOM05D005808 ORTHO05D006196 1.0e-06 56.6 34 73.5
AUR62025384 Chenopodium quinoa HOM05D005808 ORTHO05D006196 1.3e-06 56.2 33 72.7
Nitab4.5_0001036g0010 Nicotiana tabacum HOM05D005808 ORTHO05D006196 1.3e-06 56.2 34 73.5
Thecc.09G155400 Theobroma cacao HOM05D005808 ORTHO05D006196 1.3e-06 56.2 34 73.5
BcaB07g34013 Brassica carinata HOM05D005808 ORTHO05D006196 1.7e-06 55.8 34 73.5
C05p16270 Brassica napus HOM05D005808 ORTHO05D006196 1.7e-06 55.8 34 73.5
BolC5t30329H Brassica oleracea HOM05D005808 ORTHO05D006196 1.7e-06 55.8 34 73.5
Glyma.18G208900 Glycine max HOM05D005808 ORTHO05D006196 1.7e-06 55.8 34 73.5
Lj9A723T41 Lonicera japonica HOM05D005808 ORTHO05D006196 1.7e-06 55.8 34 73.5
Lj9C724T6 Lonicera japonica HOM05D005808 ORTHO05D006196 1.7e-06 55.8 34 73.5
Nitab4.5_0002809g0070 Nicotiana tabacum HOM05D005808 ORTHO05D006196 1.7e-06 55.8 34 73.5
Actinidia12360 Actinidia chinensis HOM05D005808 ORTHO05D006196 2.2e-06 55.5 36 72.2
BcaC07g38879 Brassica carinata HOM05D000226 ORTHO05D006196 2.2e-06 55.5 34 73.5
Migut.J01400 Erythranthe guttata HOM05D005808 ORTHO05D006196 2.2e-06 55.5 34 73.5
FvH4_4g08850 Fragaria vesca HOM05D005808 ORTHO05D006196 2.2e-06 55.5 34 73.5
FAN12G3030 Fragaria x ananassa HOM05D005808 ORTHO05D006196 2.2e-06 55.5 34 73.5
Nn5g27515 Nelumbo nucifera HOM05D005808 ORTHO05D006196 2.2e-06 55.5 34 70.6
TWI34G0184 Tripterygium wilfordii HOM05D005808 ORTHO05D006196 2.2e-06 55.5 34 73.5
VMungo1383G1013 Vigna mungo HOM05D005808 ORTHO05D006196 2.2e-06 55.5 34 70.6
Ciclev10008917m.g Citrus clementina HOM05D005808 ORTHO05D006196 2.9e-06 55.1 34 70.6
arahy.Tifrunner.gnm1.ann1.9Q453L Arachis hypogaea HOM05D005808 ORTHO05D006196 3.8e-06 54.7 34 67.6
CiPaw.16G105900 Carya illinoinensis HOM05D005808 ORTHO05D006196 3.8e-06 54.7 33 75.8
Lj1g0001762 Lotus japonicus HOM05D005808 ORTHO05D006196 3.8e-06 54.7 34 70.6
Medtr7g108490 Medicago truncatula HOM05D005808 ORTHO05D006196 3.8e-06 54.7 34 70.6
Psat0s2845g0200 Pisum sativum HOM05D005808 ORTHO05D006196 3.8e-06 54.7 34 70.6
A06p13950 Brassica napus HOM05D005808 ORTHO05D006196 5.0e-06 54.3 34 70.6
BraA06t24535Z Brassica rapa HOM05D002264 ORTHO05D002413 5.0e-06 54.3 34 70.6
CARHR066260 Cardamine hirsuta HOM05D005808 ORTHO05D006196 5.0e-06 54.3 34 73.5
FAN17G0928 Fragaria x ananassa HOM05D005808 ORTHO05D006196 5.0e-06 54.3 34 73.5
Gohir.A05G007600 Gossypium hirsutum HOM05D005808 ORTHO05D006196 5.0e-06 54.3 34 67.6
Gohir.D05G008500 Gossypium hirsutum HOM05D005808 ORTHO05D006196 5.0e-06 54.3 34 67.6
Gorai.009G008600 Gossypium raimondii HOM05D005808 ORTHO05D006196 5.0e-06 54.3 34 67.6
Lj6g0026768 Lotus japonicus HOM05D005808 ORTHO05D006196 5.0e-06 54.3 34 70.6
Lalb_Chr19g0124141 Lupinus albus HOM05D005808 ORTHO05D006196 5.0e-06 54.3 34 67.6
TAR626G1850 Trochodendron aralioides HOM05D005808 ORTHO05D006196 5.0e-06 54.3 34 67.6
Aqoxy7G03270 Aquilegia oxysepala HOM05D005808 ORTHO05D006196 6.5e-06 53.9 34 67.6
Cc06_g14220 Coffea canephora HOM05D005808 ORTHO05D006196 6.5e-06 53.9 32 75.0
DCAR_024732 Daucus carota HOM05D005808 ORTHO05D006196 6.5e-06 53.9 34 67.6
Peaxi162Scf00038g00063 Petunia axillaris HOM05D005808 ORTHO05D006196 6.5e-06 53.9 34 67.6
SGA_v2.0_scaffold45G17002 Striga asiatica HOM05D005808 ORTHO05D006196 6.5e-06 53.9 33 69.7
EL10Ac8g18896 Beta vulgaris HOM05D005808 ORTHO05D006196 8.5e-06 53.5 34 67.6
Carub.0001s1762 Capsella rubella HOM05D005808 ORTHO05D006196 8.5e-06 53.5 34 70.6
Solyc07g006070.1 Solanum lycopersicum HOM05D005808 ORTHO05D006196 8.5e-06 53.5 34 67.6
Sopen07g002190 Solanum pennellii HOM05D005808 ORTHO05D006196 8.5e-06 53.5 34 67.6
PGSC0003DMG400011158 Solanum tuberosum HOM05D005808 ORTHO05D006196 8.5e-06 53.5 34 67.6
TPR.G18676 Trifolium pratense HOM05D005808 ORTHO05D006196 8.5e-06 53.5 34 67.6
Zm00001eb388990 Zea mays HOM05D005808 ORTHO05D006196 8.5e-06 53.5 33 69.7


User provided reference genes

Program Settings