Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 5.2e-103 377.9 209 100.0
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 2.0e-91 339.3 208 86.5
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 8.5e-90 334.0 210 86.7
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 4.7e-88 328.2 209 83.3
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 8.0e-88 327.4 211 83.4
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 3.0e-87 325.5 209 79.9
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 7.5e-86 320.9 209 81.8
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 4.1e-84 315.1 211 80.1
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 3.5e-83 312.0 209 80.9
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 1.3e-82 310.1 209 80.4
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 3.8e-82 308.5 209 79.9
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 3.8e-82 308.5 209 79.9
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 5.0e-82 308.1 209 80.9
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 6.6e-82 307.8 209 79.9
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 1.1e-81 307.0 212 80.7
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 1.2e-80 303.5 209 79.4
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.6e-80 303.1 209 78.9
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 2.1e-80 302.8 207 79.2
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 2.1e-80 302.8 209 78.0
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.8e-80 302.4 209 78.5
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 8.0e-80 300.8 206 78.2
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 1.4e-79 300.1 212 77.4
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 1.8e-79 299.7 210 76.2
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 4.0e-79 298.5 200 80.5
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 5.2e-79 298.1 208 76.9
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 6.8e-79 297.7 207 77.8
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 1.2e-78 297.0 212 77.4
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 2.6e-78 295.8 206 77.2
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 3.4e-78 295.4 210 74.3
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 1.3e-77 293.5 207 75.8
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 8.3e-77 290.8 206 76.7
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 1.8e-76 289.7 203 77.3
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 5.4e-76 288.1 207 74.4
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 1.6e-75 286.6 209 73.7
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 3.5e-75 285.4 209 72.2
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 4.5e-75 285.0 207 73.9
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 6.6e-74 281.2 209 73.7
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 6.6e-74 281.2 211 75.4
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 5.6e-73 278.1 209 73.7
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 2.1e-72 276.2 207 71.5
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 2.3e-71 272.7 209 72.7
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 1.2e-70 270.4 209 68.9
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 2.0e-70 269.6 182 78.6
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 2.0e-70 269.6 209 68.4
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 4.4e-70 268.5 205 71.2
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 1.7e-69 266.5 209 68.9
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 1.0e-66 257.3 210 67.1
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 1.0e-66 257.3 208 65.4
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 2.3e-66 256.1 207 68.1
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 6.6e-66 254.6 209 65.6
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 1.1e-65 253.8 197 71.1
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 9.5e-65 250.8 207 66.2
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 9.5e-65 250.8 209 67.0
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 3.1e-63 245.7 207 68.1
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.9e-61 239.2 169 75.7
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 1.4e-60 236.9 159 77.4
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 5.4e-60 235.0 209 63.2
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 1.6e-59 233.4 209 64.1
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 9.5e-57 224.2 207 64.3
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.4e-52 210.3 184 63.0
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 3.3e-49 199.1 207 59.9
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 2.4e-44 183.0 203 50.2
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 5.4e-44 181.8 204 50.5
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 3.9e-42 175.6 209 49.3
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 2.6e-38 162.9 105 79.0
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 3.4e-38 162.5 105 78.1
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 1.4e-28 130.6 105 64.8
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 3.2e-28 129.4 127 57.5
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 8.7e-26 121.3 207 40.1
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 3.3e-25 119.4 111 62.2
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 9.0e-23 111.3 86 69.8
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 2.5e-20 103.2 84 65.5
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 6.7e-18 95.1 116 43.1
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 1.1e-15 87.8 178 36.5
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 1.4e-12 77.4 165 38.8
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.2e-11 74.3 54 68.5
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 1.2e-11 74.3 187 32.6
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 3.0e-10 69.7 121 42.1
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 1.4e-07 60.8 178 30.3


User provided reference genes

Program Settings