Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1781.5 864 100.0
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1627.5 869 92.2
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1467.2 872 81.9
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1386.3 863 76.9
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1371.3 863 77.2
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1370.5 861 76.1
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1365.9 868 75.5
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1365.5 868 75.8
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1361.7 863 75.8
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1360.9 863 75.8
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1360.9 864 75.8
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1359.7 863 75.7
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1350.9 867 74.4
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1349.0 883 73.3
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1347.4 868 74.5
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1346.6 863 75.2
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1344.7 867 74.2
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1340.9 863 75.3
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1340.9 874 73.9
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1337.8 863 74.6
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1332.0 862 73.8
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1331.2 872 73.6
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1330.1 868 74.4
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1329.3 878 73.1
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1328.2 862 73.7
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1327.4 862 73.8
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1325.8 864 74.8
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1325.1 861 74.3
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1322.8 862 73.5
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1322.8 867 73.0
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1322.4 866 73.9
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1321.6 865 74.1
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1320.1 863 73.9
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1319.7 859 73.3
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1318.5 870 72.8
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1317.8 877 72.4
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1312.4 869 72.6
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1311.6 860 73.6
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1309.3 868 74.1
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1308.9 865 73.8
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1304.7 884 71.7
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1304.7 881 71.5
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1304.3 865 72.8
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1298.1 860 72.6
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1297.7 869 71.1
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1295.4 872 71.1
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1288.5 869 71.7
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1285.4 865 70.6
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1281.9 864 70.6
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 865 71.3
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1279.2 860 71.5
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1276.9 862 71.6
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1276.2 749 83.7
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1271.5 860 71.2
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1269.6 870 70.7
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1268.1 859 70.3
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1264.6 862 69.5
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1263.8 862 70.2
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1263.1 862 69.6
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1261.9 869 70.3
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1253.4 862 68.9
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1252.7 860 69.9
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1243.0 869 68.6
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1241.9 866 69.5
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1241.5 863 68.9
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1236.1 861 69.1
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1234.2 883 67.8
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1232.2 872 67.8
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1232.2 864 69.1
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1230.7 859 69.8
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 864 68.4
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 875 68.0
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1224.2 864 68.3
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 864 68.2
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 864 68.3
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 864 68.2
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 866 68.0
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1220.7 866 67.9
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1219.5 860 68.0
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1218.0 871 67.7
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 860 67.9
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1215.7 861 68.1
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1212.6 866 67.2
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 862 68.2
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1211.8 860 67.3
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1210.7 868 67.5
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1206.8 862 68.0
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1202.2 862 67.7
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1185.6 825 69.1
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1166.0 867 65.3
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1129.4 853 64.9
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 0.0e+00 1105.1 691 75.4
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 0.0e+00 1102.0 860 65.3
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 0.0e+00 1095.5 647 79.3
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1093.2 858 61.3
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 2.2e-309 1065.4 861 61.2
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 1.3e-293 1013.1 692 69.5
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 2.9e-293 1011.9 859 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 4.6e-291 1004.6 865 55.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.1e-284 983.4 866 56.5
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.6e-278 962.2 865 54.2
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 7.1e-207 724.9 779 47.4
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.7e-164 582.4 388 71.9
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 6.1e-158 562.4 479 59.3
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.4e-146 524.6 460 57.4
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.7e-137 493.8 359 68.0
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 9.9e-92 342.4 306 58.2
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 3.4e-68 264.2 204 62.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.2e-66 257.7 168 72.6
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 9.4e-58 229.6 175 66.3
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.0e-43 183.0 170 55.9
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 3.6e-41 174.5 198 49.5
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.3e-38 166.0 216 44.4
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 2.3e-32 145.2 151 47.0
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.0e-28 132.1 85 72.9
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 1.4e-24 119.4 69 81.2
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.6e-23 115.2 119 55.5
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 3.4e-23 114.8 87 65.5
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 9.8e-23 113.2 90 63.3
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.2e-20 106.3 80 62.5
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 5.0e-19 100.9 106 49.1
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.0e-15 89.0 296 25.0
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 3.7e-14 84.7 321 24.9
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 8.3e-14 83.6 308 25.0
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.9e-13 82.4 323 26.0
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.6e-12 79.3 297 24.9
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.0e-12 79.0 329 24.3
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 3.9e-11 74.7 305 23.3
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 9.5e-10 70.1 95 45.3
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.2e-09 67.4 33 87.9
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 6.2e-09 67.4 314 23.6
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-08 66.6 64 50.0
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.4e-08 66.2 297 23.9
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 1.4e-08 66.2 303 26.1
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.8e-08 65.9 242 24.8
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.3e-08 65.5 296 24.7
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.1e-08 65.1 171 28.1
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 6.8e-08 63.9 289 25.3
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 6.8e-08 63.9 340 21.8
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.5e-07 62.8 168 26.8
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.0e-07 62.4 298 22.1
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 5.8e-07 60.8 85 42.4
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.7e-06 59.3 223 27.4
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 4.9e-06 57.8 302 25.8


User provided reference genes

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