Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 1.1e-190 669.8 359 100.0
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 2.8e-173 612.1 359 89.7
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 5.8e-163 577.8 397 82.9
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 7.4e-158 560.8 360 83.1
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 5.8e-155 551.2 343 84.5
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 2.2e-154 549.3 351 82.3
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 4.2e-153 545.0 354 81.1
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 3.5e-152 542.0 361 79.5
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 8.7e-151 537.3 362 79.3
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 1.9e-150 536.2 355 78.3
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 7.4e-150 534.3 359 79.1
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.6e-149 533.1 361 78.7
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 5.3e-148 528.1 356 78.1
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 6.9e-148 527.7 356 78.1
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.2e-147 526.9 354 77.7
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 8.5e-146 520.8 340 81.5
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 3.2e-145 518.8 350 77.4
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 7.2e-145 517.7 359 77.2
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 3.6e-144 515.4 341 80.6
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 4.6e-144 515.0 344 80.8
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.0e-143 513.8 343 77.6
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.4e-143 513.5 343 77.8
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 6.7e-143 511.1 351 78.1
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 3.3e-142 508.8 353 76.8
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 9.7e-142 507.3 346 77.7
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 1.3e-141 506.9 356 75.6
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 1.7e-141 506.5 435 65.5
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 3.7e-141 505.4 359 75.2
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.4e-140 503.4 349 76.2
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 4.1e-140 501.9 355 75.2
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 1.5e-139 500.0 323 79.6
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.0e-138 497.3 359 74.1
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.7e-138 496.5 351 75.2
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 5.0e-138 495.0 344 76.7
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 5.0e-138 495.0 356 75.0
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 6.5e-138 494.6 356 74.4
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 2.5e-137 492.7 331 80.1
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.1e-136 489.6 354 73.7
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 4.7e-136 488.4 351 74.6
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.8e-135 486.5 351 74.1
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 3.0e-135 485.7 339 76.7
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 8.8e-135 484.2 346 71.1
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 1.5e-134 483.4 340 76.2
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 2.0e-134 483.0 359 73.5
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.6e-134 482.6 356 71.6
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.6e-134 482.6 346 70.5
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 2.6e-134 482.6 359 73.0
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.8e-133 479.2 340 75.3
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 2.8e-133 479.2 357 71.7
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 4.8e-133 478.4 340 75.6
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.8e-133 478.4 340 75.6
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.8e-133 478.4 340 75.6
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 1.1e-132 477.2 340 74.1
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.4e-132 476.9 372 69.6
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 1.4e-132 476.9 369 71.8
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 7.0e-132 474.6 332 74.7
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 2.0e-131 473.0 356 72.8
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 2.0e-131 473.0 354 71.5
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 2.6e-131 472.6 386 72.0
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 4.5e-131 471.9 356 72.5
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 7.7e-131 471.1 354 70.9
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 1.3e-130 470.3 351 73.8
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.9e-130 469.2 340 72.9
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.9e-130 469.2 335 75.5
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 3.8e-130 468.8 345 72.5
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 5.0e-130 468.4 350 72.0
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 6.5e-130 468.0 339 73.5
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 6.5e-130 468.0 359 71.9
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 1.4e-129 466.8 339 73.2
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 1.9e-129 466.5 355 72.1
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 3.2e-129 465.7 318 77.7
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 7.2e-129 464.5 354 70.9
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 9.4e-129 464.2 352 72.2
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.6e-128 463.4 346 72.3
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.6e-128 463.4 348 71.0
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 3.6e-128 462.2 337 73.3
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 6.1e-128 461.5 347 71.5
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.4e-127 460.3 340 72.9
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 5.7e-126 454.9 351 70.7
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.4e-126 454.5 346 71.7
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 9.7e-126 454.1 346 70.8
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 9.7e-126 454.1 311 77.2
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 4.8e-125 451.8 354 69.8
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.4e-124 450.3 298 76.5
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 5.3e-124 448.4 345 68.1
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.6e-123 446.8 337 70.9
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 2.2e-122 443.0 318 75.5
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 3.8e-122 442.2 292 79.1
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 3.2e-121 439.1 334 68.0
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 1.2e-120 437.2 283 80.9
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 8.8e-119 431.0 413 61.5
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 1.3e-117 427.2 344 64.5
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.2e-115 420.6 300 75.0
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 5.9e-115 418.3 347 66.6
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 6.5e-114 414.8 294 74.8
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 4.7e-112 408.7 332 66.9
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.4e-111 407.1 321 68.8
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.8e-111 406.8 353 65.2
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 1.3e-109 400.6 340 65.6
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 3.1e-108 396.0 277 76.9
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.2e-107 394.0 300 72.0
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.7e-107 392.9 400 58.2
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 2.1e-104 383.3 437 52.6
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.4e-103 380.6 398 59.5
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 6.8e-103 378.3 294 71.1
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 9.8e-102 374.4 248 77.4
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 5.9e-99 365.2 229 82.1
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 6.6e-98 361.7 334 59.0
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.6e-97 358.6 408 55.1
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 5.2e-95 352.1 248 77.8
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.5e-94 350.5 338 58.0
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 6.4e-93 345.1 235 77.0
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 1.0e-90 337.8 260 72.7
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 4.3e-89 332.4 239 73.6
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 1.9e-84 317.0 244 70.9
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 5.4e-84 315.5 276 65.9
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 6.8e-79 298.5 304 57.6
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 7.5e-78 295.0 204 73.0
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 2.4e-76 290.0 223 68.2
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 4.1e-76 289.3 238 63.9
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 6.6e-74 282.0 333 48.9
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 5.2e-71 272.3 324 46.6
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 4.4e-70 269.2 185 78.4
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 8.7e-66 255.0 336 43.2
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 4.3e-57 226.1 148 76.4
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 1.8e-55 220.7 144 83.3
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 2.4e-52 210.3 145 71.0
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 3.9e-50 203.0 196 58.7
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 1.7e-45 187.6 170 62.4
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.9e-44 184.1 129 72.9
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 2.9e-37 160.2 113 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 3.2e-36 156.8 311 35.4
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.1e-36 155.6 97 85.6
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.8e-31 141.0 127 68.5
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 7.9e-27 125.6 182 46.2
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 4.3e-25 119.8 86 73.3
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 2.6e-22 110.5 99 54.5
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 4.5e-22 109.8 231 34.6
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 6.5e-21 105.9 110 55.5
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 8.8e-18 95.5 78 64.1
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 1.3e-16 91.7 52 92.3
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 8.2e-16 89.0 57 80.7
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.8e-15 87.8 50 84.0
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 1.7e-13 81.3 68 60.3
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 1.7e-13 81.3 53 79.2
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 3.6e-11 73.6 57 54.4
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 1.1e-09 68.6 72 44.4
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 2.6e-09 67.4 74 55.4
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 4.4e-09 66.6 56 53.6
FvH4_1g08700 Fragaria vesca HOM05D000069 ORTHO05D021424 1.4e-07 61.6 44 68.2
arahy.Tifrunner.gnm1.ann1.9B3XF4 Arachis hypogaea HOM05D000237 ORTHO05D017465 7.0e-07 59.3 51 51.0
FAN23G2278 Fragaria x ananassa HOM05D002335 ORTHO05D200751 7.7e-06 55.8 32 90.6


User provided reference genes

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