Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 4.5e-120 436.0 591 100.0
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 4.2e-118 429.5 591 99.5
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 1.0e-92 345.1 365 72.6
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 1.4e-92 344.7 363 73.3
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 8.9e-92 342.0 363 73.0
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 1.7e-66 258.1 203 68.5
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 2.5e-62 244.2 187 70.1
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 1.3e-58 231.9 205 62.4
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 2.4e-57 227.6 193 60.1
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 9.3e-57 225.7 182 63.2
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 1.0e-55 222.2 186 61.8
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 9.6e-54 215.7 190 62.1
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 3.6e-53 213.8 199 60.3
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 4.0e-52 210.3 155 71.0
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 4.5e-51 206.8 190 56.3
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 9.9e-51 205.7 197 57.9
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.3e-50 205.3 195 57.9
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 8.4e-50 202.6 203 55.7
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 8.4e-50 202.6 198 57.1
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 1.2e-48 198.7 199 56.8
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 4.6e-48 196.8 154 63.0
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 2.3e-47 194.5 174 59.2
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 6.7e-47 193.0 202 55.9
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 1.5e-46 191.8 154 63.6
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 2.8e-45 187.6 203 53.7
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 1.8e-44 184.9 140 65.0
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 9.9e-43 179.1 155 61.3
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.7e-42 178.3 199 52.3
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 8.4e-42 176.0 178 53.9
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 8.4e-42 176.0 151 60.3
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 2.7e-40 171.0 154 57.1
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 3.5e-40 170.6 154 57.8
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 4.6e-40 170.2 151 55.0
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 7.4e-38 162.9 158 57.0
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 3.7e-37 160.6 156 57.1
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 1.4e-33 148.7 142 54.2
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 5.5e-33 146.7 160 51.2
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 7.1e-33 146.4 142 52.8
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 9.3e-33 146.0 162 51.2
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 2.1e-32 144.8 140 55.7
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 2.1e-32 144.8 139 53.2
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 3.5e-32 144.1 98 69.4
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 3.5e-32 144.1 133 53.4
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 3.5e-32 144.1 133 53.4
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 3.5e-32 144.1 135 56.3
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 6.0e-32 143.3 138 53.6
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 6.0e-32 143.3 139 54.0
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 1.0e-31 142.5 133 53.4
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 2.3e-31 141.4 183 47.0
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 8.7e-31 139.4 155 48.4
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 1.1e-30 139.0 110 58.2
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.5e-30 138.7 145 51.7
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 1.5e-30 138.7 119 55.5
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.9e-30 138.3 152 54.6
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 3.3e-30 137.5 143 51.0
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 4.3e-30 137.1 110 57.3
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 5.7e-30 136.7 133 51.1
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.3e-29 135.6 122 55.7
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.3e-29 135.6 122 55.7
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 2.8e-29 134.4 110 57.3
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 6.3e-29 133.3 118 56.8
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 6.3e-29 133.3 118 56.8
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 6.3e-29 133.3 152 52.6
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 1.4e-28 132.1 133 51.9
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 1.4e-28 132.1 157 47.8
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 2.4e-28 131.3 109 55.0
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 3.1e-28 131.0 133 51.1
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 4.1e-28 130.6 141 47.5
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 5.3e-28 130.2 149 54.4
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 6.9e-28 129.8 142 48.6
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.2e-27 129.0 118 57.6
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 3.4e-27 127.5 115 57.4
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 4.5e-27 127.1 135 53.3
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 1.0e-26 125.9 148 50.7
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.7e-26 125.2 116 56.9
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 3.8e-26 124.0 157 50.3
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 4.2e-25 120.6 110 50.9
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 1.6e-24 118.6 111 51.4
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 2.7e-24 117.9 110 50.9
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 2.7e-24 117.9 111 53.2
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 7.9e-24 116.3 114 52.6
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 5.1e-23 113.6 117 49.6
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 1.1e-22 112.5 112 49.1
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 1.5e-22 112.1 108 50.9
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 4.3e-22 110.5 149 44.3
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 5.7e-22 110.2 114 52.6
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 7.4e-22 109.8 117 53.8
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 1.3e-21 109.0 80 60.0
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 4.8e-21 107.1 121 46.3
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 6.3e-21 106.7 147 44.9
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 6.3e-21 106.7 111 51.4
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 1.4e-20 105.5 128 44.5
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 1.8e-20 105.1 106 48.1
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 2.4e-20 104.8 115 47.0
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 4.1e-20 104.0 155 39.4
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 4.1e-20 104.0 114 50.9
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 5.3e-20 103.6 112 47.3
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.5e-19 102.1 89 58.4
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 5.0e-18 97.1 147 39.5
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 5.0e-18 97.1 116 46.6
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 5.0e-18 97.1 116 46.6
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 8.5e-18 96.3 111 46.8
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.1e-16 91.7 149 38.3
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.1e-16 91.7 149 38.3
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 1.0e-15 89.4 150 38.7
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 1.8e-15 88.6 150 38.7
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 2.3e-15 88.2 157 34.4
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 3.0e-15 87.8 110 42.7
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 1.1e-14 85.9 64 65.6
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.5e-14 85.5 150 40.7
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 7.4e-14 83.2 98 44.9
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.4e-12 79.0 77 51.9
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.4e-12 79.0 110 42.7
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 6.5e-10 70.1 84 40.5
SEGI_12554 Sequoiadendron giganteum HOM05D006080 ORTHO05D007382 8.5e-10 69.7 135 31.9
Atru.chr7.1704 Acer truncatum HOM05D006080 ORTHO05D007382 2.6e-06 58.2 48 62.5


User provided reference genes

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