Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 3.0e-43 178.3 105 100.0
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 4.1e-24 114.8 106 63.2
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 1.2e-23 113.2 106 62.3
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 1.5e-21 106.3 106 56.6
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.2e-20 103.2 106 60.4
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 1.2e-20 103.2 106 57.5
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 1.2e-20 103.2 106 55.7
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 2.1e-20 102.4 106 57.5
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 3.6e-20 101.7 107 57.0
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 4.7e-20 101.3 107 57.9
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 8.0e-20 100.5 106 57.5
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 1.8e-19 99.4 105 53.3
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 3.0e-19 98.6 106 57.5
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 4.0e-19 98.2 106 53.8
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 6.8e-19 97.4 107 56.1
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 1.2e-18 96.7 106 54.7
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.5e-18 96.3 107 57.0
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 2.0e-18 95.9 106 54.7
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 2.6e-18 95.5 106 54.7
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 5.7e-18 94.4 107 55.1
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 7.5e-18 94.0 105 49.5
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 7.5e-18 94.0 106 52.8
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 2.2e-17 92.4 109 52.3
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 3.7e-17 91.7 108 50.9
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 4.8e-17 91.3 106 50.9
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 4.8e-17 91.3 106 50.9
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 1.4e-16 89.7 105 48.6
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 2.4e-16 89.0 105 51.4
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 3.1e-16 88.6 106 50.9
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 5.4e-16 87.8 108 50.9
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 5.4e-16 87.8 105 51.4
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 9.1e-16 87.0 106 49.1
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 9.1e-16 87.0 106 50.0
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.6e-15 86.3 106 58.5
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 2.7e-15 85.5 108 46.3
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 2.7e-15 85.5 106 49.1
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 5.9e-15 84.3 106 48.1
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 5.9e-15 84.3 106 62.3
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 7.7e-15 84.0 58 69.0
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 1.3e-14 83.2 107 47.7
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 2.2e-14 82.4 95 49.5
Haze_26058 Corylus avellana HOM05D007531 ORTHO05D009484 2.9e-14 82.0 64 92.2
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 2.9e-14 82.0 101 49.5
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 3.8e-14 81.6 110 44.5
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 5.0e-14 81.3 106 43.4
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 5.0e-14 81.3 106 43.4
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 5.0e-14 81.3 58 69.0
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 6.5e-14 80.9 106 45.3
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 8.5e-14 80.5 113 44.2
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 8.5e-14 80.5 106 46.2
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 8.5e-14 80.5 107 44.9
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 8.5e-14 80.5 107 44.9
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 1.5e-13 79.7 106 45.3
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 1.9e-13 79.3 112 43.8
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 1.9e-13 79.3 112 43.8
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 1.9e-13 79.3 110 48.2
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 2.5e-13 79.0 116 47.4
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 3.2e-13 78.6 106 49.1
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 3.2e-13 78.6 106 44.3
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 4.2e-13 78.2 106 40.6
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.2e-13 78.2 106 40.6
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 5.5e-13 77.8 56 64.3
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 5.5e-13 77.8 56 64.3
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 5.5e-13 77.8 106 46.2
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 7.2e-13 77.4 111 50.5
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 7.2e-13 77.4 106 40.6
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 7.2e-13 77.4 57 63.2
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 7.2e-13 77.4 57 63.2
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 9.5e-13 77.0 59 67.8
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 9.5e-13 77.0 57 64.9
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 9.5e-13 77.0 53 67.9
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.2e-12 76.6 56 62.5
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.2e-12 76.6 56 62.5
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 1.2e-12 76.6 45 77.8
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 2.1e-12 75.9 53 69.8
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 2.7e-12 75.5 102 47.1
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 4.7e-12 74.7 102 45.1
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 8.0e-12 73.9 51 68.6
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 8.0e-12 73.9 58 67.2
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 1.0e-11 73.6 56 64.3
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 1.4e-11 73.2 53 64.2
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 1.4e-11 73.2 53 64.2
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 1.4e-11 73.2 53 66.0
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 2.3e-11 72.4 58 58.6
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 3.0e-11 72.0 108 44.4
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 8.8e-11 70.5 43 69.8
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 1.2e-10 70.1 58 56.9
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 1.5e-10 69.7 58 62.1
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 9.8e-10 67.0 51 64.7
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.3e-09 66.6 105 38.1
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 1.7e-09 66.2 39 71.8
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 3.7e-09 65.1 48 64.6
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 4.9e-09 64.7 48 62.5
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 3.5e-07 58.5 43 60.5


User provided reference genes

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