Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 2.3e-125 452.2 227 100.0
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 4.6e-121 438.0 242 92.1
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 5.8e-116 421.0 236 89.4
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 1.3e-115 419.9 225 92.0
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 2.9e-115 418.7 234 90.6
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 3.7e-115 418.3 234 90.2
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 1.9e-114 416.0 225 92.0
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 3.2e-114 415.2 225 91.6
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.2e-113 413.3 230 90.0
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 1.2e-113 413.3 232 90.1
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 2.7e-113 412.1 233 88.8
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 6.0e-113 411.0 233 88.4
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 7.8e-113 410.6 225 89.8
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 1.7e-112 409.5 236 88.6
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 2.3e-112 409.1 236 87.7
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 3.9e-112 408.3 230 89.6
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 2.5e-111 405.6 226 89.8
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 9.5e-111 403.7 236 86.9
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 1.6e-110 402.9 225 88.9
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 2.8e-110 402.1 232 87.1
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 3.6e-110 401.7 233 85.8
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 3.1e-109 398.7 230 86.5
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 3.1e-109 398.7 221 89.6
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 4.0e-109 398.3 234 87.2
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 5.2e-109 397.9 233 86.7
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 5.2e-109 397.9 225 85.3
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 6.8e-109 397.5 234 86.8
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 6.8e-109 397.5 222 87.4
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 6.8e-109 397.5 222 87.4
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 6.8e-109 397.5 225 88.0
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 6.8e-109 397.5 233 85.0
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 8.9e-109 397.1 227 85.9
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 8.9e-109 397.1 227 85.9
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 8.9e-109 397.1 230 86.5
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.0e-108 396.0 222 86.9
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.0e-108 396.0 222 86.5
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 2.6e-108 395.6 232 83.6
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.4e-108 395.2 222 86.5
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.4e-108 395.2 222 86.5
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 3.4e-108 395.2 234 84.6
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 5.8e-108 394.4 232 84.9
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 5.8e-108 394.4 233 84.1
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 5.8e-108 394.4 236 84.3
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 7.6e-108 394.0 230 84.8
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 1.3e-107 393.3 233 85.0
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 1.7e-107 392.9 233 84.1
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 2.2e-107 392.5 230 83.5
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 3.7e-107 391.7 222 86.9
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 4.9e-107 391.3 230 85.7
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 6.4e-107 391.0 230 85.7
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 6.4e-107 391.0 235 83.4
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 8.3e-107 390.6 222 86.9
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 1.4e-106 389.8 233 83.7
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 1.9e-106 389.4 234 83.3
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 5.4e-106 387.9 234 83.8
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 7.1e-106 387.5 221 85.5
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.1e-105 386.0 226 84.1
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.5e-105 385.2 229 84.3
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 7.8e-105 384.0 233 83.3
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 2.3e-104 382.5 219 86.3
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 2.3e-104 382.5 226 85.4
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 3.0e-104 382.1 219 85.4
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 5.1e-104 381.3 233 79.8
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 1.1e-103 380.2 232 80.2
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 1.1e-103 380.2 231 84.0
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 1.5e-103 379.8 222 82.4
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 3.3e-103 378.6 222 82.4
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 9.6e-103 377.1 218 83.5
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 1.6e-102 376.3 238 78.2
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.6e-102 376.3 222 81.5
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 4.7e-102 374.8 219 82.2
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 4.7e-102 374.8 226 82.7
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 2.4e-101 372.5 233 80.3
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 2.4e-101 372.5 231 80.1
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 2.4e-101 372.5 222 81.1
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 3.1e-101 372.1 230 82.2
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 3.1e-101 372.1 219 82.6
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 5.2e-101 371.3 231 80.1
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 6.8e-101 370.9 221 80.5
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.2e-100 370.2 219 82.6
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 5.8e-100 367.9 232 77.6
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 9.9e-100 367.1 240 75.4
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 2.9e-99 365.5 232 77.6
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 4.9e-99 364.8 232 78.4
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 4.9e-99 364.8 231 76.6
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.1e-98 363.6 219 81.3
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 1.4e-98 363.2 232 77.2
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 2.4e-98 362.5 232 76.3
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 4.2e-98 361.7 219 79.5
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 4.2e-98 361.7 219 79.5
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 5.4e-98 361.3 233 76.8
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 7.1e-98 360.9 219 81.3
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 1.2e-97 360.1 232 77.6
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 1.6e-97 359.8 233 76.8
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 1.6e-97 359.8 219 80.8
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 2.1e-97 359.4 219 79.9
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 2.1e-97 359.4 234 77.8
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 2.7e-97 359.0 221 81.4
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 6.0e-97 357.8 220 79.1
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 1.3e-96 356.7 233 76.0
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 1.1e-95 353.6 233 79.0
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 1.9e-95 352.8 232 80.2
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 3.3e-95 352.1 229 78.2
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 2.1e-94 349.4 233 74.7
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 4.8e-94 348.2 219 78.5
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 2.4e-93 345.9 304 61.2
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 4.0e-93 345.1 245 71.0
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 9.0e-93 344.0 315 61.3
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 2.6e-92 342.4 221 78.7
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 2.2e-91 339.3 232 74.6
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 8.4e-91 337.4 187 88.8
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 2.4e-90 335.9 227 72.7
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 2.1e-89 332.8 219 72.1
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 3.5e-89 332.0 222 70.7
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 2.5e-87 325.9 232 71.1
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 4.8e-86 321.6 232 69.4
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 1.4e-85 320.1 198 78.8
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 6.9e-85 317.8 192 79.2
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 2.9e-83 312.4 217 68.2
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 2.9e-83 312.4 217 67.7
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 5.4e-82 308.1 183 81.4
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 2.1e-81 306.2 230 70.4
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 1.8e-80 303.1 220 64.5
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.3e-79 298.9 198 78.3
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.2e-73 280.4 197 70.6
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 6.0e-73 278.1 168 79.2
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 5.5e-66 255.0 160 80.6
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 6.7e-64 248.1 224 59.4
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 4.8e-54 215.3 150 67.3
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 1.4e-53 213.8 218 50.5
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 2.0e-44 183.3 119 72.3
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 4.5e-36 155.6 89 85.4
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 9.4e-34 147.9 189 37.0
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 3.4e-31 139.4 97 76.3
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 1.8e-21 107.1 209 31.1
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.3e-11 74.3 41 78.0


User provided reference genes

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