Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 1.1e-220 769.6 365 100.0
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 2.5e-206 721.8 369 94.6
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 1.1e-143 513.8 330 77.6
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 8.4e-117 424.5 258 79.8
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.6e-112 410.2 230 84.3
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 6.2e-112 408.3 346 60.7
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 8.1e-112 407.9 346 60.4
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 1.1e-111 407.5 286 70.6
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 1.1e-111 407.5 307 67.4
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.1e-111 407.5 342 61.4
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 1.8e-111 406.8 252 79.4
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 2.4e-111 406.4 248 79.8
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 5.3e-111 405.2 337 64.1
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 5.8e-110 401.7 293 68.3
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 9.9e-110 401.0 284 68.3
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 3.8e-109 399.1 327 62.7
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 3.8e-109 399.1 285 70.2
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.1e-108 397.5 324 63.6
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 1.1e-108 397.5 213 87.8
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 4.2e-108 395.6 332 62.7
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 1.6e-107 393.7 335 61.8
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 2.1e-107 393.3 329 60.8
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 2.7e-107 392.9 329 60.5
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 2.7e-107 392.9 247 75.3
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 1.0e-106 391.0 331 61.0
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 1.8e-106 390.2 245 73.9
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 5.1e-106 388.7 347 59.4
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 6.7e-106 388.3 244 75.4
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 8.7e-106 387.9 252 74.6
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.1e-105 387.5 317 61.2
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 1.5e-105 387.1 293 64.8
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 2.5e-105 386.3 338 59.8
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 1.3e-104 384.0 337 60.5
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 4.8e-104 382.1 301 65.4
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 4.8e-104 382.1 313 62.9
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 8.1e-104 381.3 367 56.9
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 8.1e-104 381.3 351 57.8
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 1.4e-103 380.6 225 80.9
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 1.8e-103 380.2 213 83.1
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.8e-103 380.2 247 73.7
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 2.4e-103 379.8 202 86.1
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 5.3e-103 378.6 218 81.2
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 6.9e-103 378.3 339 58.1
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 1.5e-102 377.1 213 81.7
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 3.4e-102 375.9 265 69.8
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 4.5e-102 375.6 250 75.2
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 7.6e-102 374.8 210 81.4
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.0e-101 374.4 253 71.1
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.7e-101 373.6 340 57.9
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.7e-101 373.6 260 70.4
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 2.2e-101 373.2 221 79.2
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.2e-101 373.2 221 79.2
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.2e-101 373.2 242 74.0
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 3.8e-101 372.5 271 67.5
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 4.9e-101 372.1 286 64.7
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 4.9e-101 372.1 221 79.2
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 6.5e-101 371.7 310 62.6
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 8.4e-101 371.3 262 70.2
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 1.1e-100 370.9 213 80.8
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.4e-100 370.5 210 81.4
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 2.5e-100 369.8 266 69.2
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 2.5e-100 369.8 213 81.2
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 4.2e-100 369.0 239 73.2
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 5.5e-100 368.6 237 75.1
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 5.5e-100 368.6 294 61.6
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 5.5e-100 368.6 272 67.3
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 7.1e-100 368.2 347 57.1
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 9.3e-100 367.9 246 71.5
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 9.3e-100 367.9 286 63.3
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 1.2e-99 367.5 294 64.3
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.2e-99 367.5 272 67.3
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 1.6e-99 367.1 213 79.3
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 2.1e-99 366.7 300 61.7
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 2.7e-99 366.3 289 63.3
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 2.7e-99 366.3 286 62.9
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 2.7e-99 366.3 313 59.7
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 3.5e-99 365.9 325 59.1
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 1.0e-98 364.4 312 59.3
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 1.0e-98 364.4 312 59.3
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 1.0e-98 364.4 286 62.9
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 1.8e-98 363.6 247 72.1
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 2.3e-98 363.2 248 70.2
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 3.0e-98 362.8 307 60.3
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 3.9e-98 362.5 287 63.1
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 8.7e-98 361.3 346 55.2
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 8.7e-98 361.3 283 64.3
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 1.1e-97 360.9 346 55.2
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 1.1e-97 360.9 232 73.7
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.5e-97 360.5 214 79.0
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 2.5e-97 359.8 205 76.6
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 2.5e-97 359.8 286 61.5
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 3.3e-97 359.4 240 71.7
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 1.3e-96 357.5 237 73.4
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 2.8e-96 356.3 289 60.9
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 2.8e-96 356.3 289 60.9
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 4.8e-96 355.5 204 80.4
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 4.8e-96 355.5 243 70.8
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 1.8e-95 353.6 213 77.5
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 4.1e-95 352.4 246 67.9
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 9.0e-95 351.3 206 77.7
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 9.0e-95 351.3 206 77.7
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.0e-93 347.8 212 73.6
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.3e-93 347.4 194 80.9
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.7e-93 347.1 215 74.9
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.2e-93 346.7 194 80.9
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 3.8e-93 345.9 195 81.0
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 1.4e-92 344.0 224 73.7
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 4.2e-92 342.4 355 54.1
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 9.3e-92 341.3 212 73.6
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.5e-91 339.3 210 72.9
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 7.9e-91 338.2 294 59.2
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 3.3e-89 332.8 312 56.1
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 4.8e-88 328.9 254 63.8
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 6.3e-88 328.6 208 73.6
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.1e-87 325.9 219 66.2
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.2e-86 324.3 220 66.4
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.1e-84 317.8 206 69.9
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.9e-76 290.4 234 56.8
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 7.9e-75 285.0 160 80.0
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 2.3e-74 283.5 162 75.9
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 3.9e-74 282.7 162 77.8
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 1.1e-73 281.2 197 61.4
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 1.4e-71 274.2 329 48.6
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 4.1e-71 272.7 178 75.3
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.2e-70 271.2 195 62.1
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 3.8e-69 266.2 145 82.1
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.8e-69 266.2 151 78.8
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 6.1e-67 258.8 145 82.8
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 5.5e-60 235.7 201 55.2
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 1.2e-54 218.0 122 77.0
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 2.9e-53 213.4 152 67.8
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.6e-46 191.0 156 60.3
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 2.1e-43 180.6 204 43.6
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.7e-32 144.4 111 58.6
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.2e-24 117.5 86 55.8
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 1.9e-20 104.4 203 41.4
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 3.6e-19 100.1 56 82.1
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.4e-18 98.2 88 59.1
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 9.9e-17 92.0 149 40.3
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 4.9e-16 89.7 56 76.8
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.4e-15 88.2 103 49.5
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 5.1e-13 79.7 57 68.4
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 1.5e-09 68.2 87 49.4
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 3.4e-09 67.0 37 75.7
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.2e-06 58.5 82 40.2


User provided reference genes

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