Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 2.2e-91 339.0 176 100.0
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.2e-89 333.2 176 97.7
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 2.0e-79 299.3 176 89.8
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 9.1e-77 290.4 177 86.4
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 5.9e-76 287.7 175 86.3
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 7.7e-76 287.3 176 85.8
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.3e-75 286.6 176 83.5
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 3.2e-74 282.0 176 84.1
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 7.2e-74 280.8 176 83.5
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.6e-73 279.6 176 83.5
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 2.7e-73 278.9 176 84.1
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.0e-72 276.9 177 84.2
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.8e-72 276.2 176 83.5
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 1.8e-72 276.2 176 83.0
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 2.3e-72 275.8 176 81.8
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 3.0e-72 275.4 177 83.6
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 3.0e-72 275.4 176 83.5
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 2.6e-71 272.3 177 84.7
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 9.8e-71 270.4 176 80.1
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 3.7e-70 268.5 184 80.4
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 4.8e-70 268.1 178 82.6
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 6.3e-70 267.7 176 80.1
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 1.1e-69 266.9 177 80.8
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 1.4e-69 266.5 177 79.7
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 2.4e-69 265.8 176 79.5
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 4.1e-69 265.0 178 77.5
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 7.0e-69 264.2 178 81.5
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 4.5e-68 261.5 176 79.5
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 5.9e-68 261.2 176 79.0
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.7e-67 259.6 176 79.5
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.7e-67 259.6 176 77.8
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 5.0e-67 258.1 175 78.3
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.1e-66 256.9 176 76.7
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.5e-66 256.5 176 77.8
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 1.9e-66 256.1 177 78.5
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 5.5e-66 254.6 178 79.2
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 7.2e-66 254.2 177 78.0
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 4.0e-64 248.4 175 75.4
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 5.2e-64 248.1 176 74.4
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 5.2e-64 248.1 176 75.0
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 5.2e-64 248.1 176 73.9
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 5.2e-64 248.1 178 77.0
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 6.8e-64 247.7 177 76.8
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.2e-63 246.9 177 77.4
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 1.2e-63 246.9 178 76.4
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 2.0e-63 246.1 176 75.6
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 2.0e-63 246.1 177 74.0
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 3.4e-63 245.4 179 76.0
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 3.4e-63 245.4 179 76.0
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 6.3e-62 241.1 180 75.6
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 1.4e-61 240.0 176 73.3
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.4e-61 240.0 176 72.7
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 1.8e-61 239.6 180 75.0
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 2.4e-61 239.2 176 75.0
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 3.1e-61 238.8 176 73.9
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 3.1e-61 238.8 176 73.9
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 3.1e-61 238.8 176 73.9
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 4.1e-61 238.4 176 73.3
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 4.1e-61 238.4 180 73.3
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 9.2e-61 237.3 177 74.6
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 1.2e-60 236.9 176 73.9
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.7e-60 235.7 176 72.7
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 5.9e-60 234.6 178 74.7
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 5.9e-60 234.6 177 73.4
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.9e-58 229.6 151 79.5
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 2.5e-58 229.2 176 72.7
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 3.3e-58 228.8 181 71.3
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 4.3e-58 228.4 177 71.8
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 4.3e-58 228.4 183 69.4
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 5.6e-58 228.0 179 72.6
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 9.5e-58 227.3 176 68.2
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 1.2e-57 226.9 177 67.8
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.2e-57 226.9 178 71.3
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.2e-57 226.9 178 71.3
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 1.6e-57 226.5 176 71.0
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 3.6e-57 225.3 177 71.8
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 4.7e-57 224.9 178 69.7
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 6.1e-57 224.6 177 69.5
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 6.1e-57 224.6 176 68.2
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 8.0e-57 224.2 176 69.9
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 8.0e-57 224.2 179 70.4
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 1.4e-56 223.4 176 67.6
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.4e-56 223.4 177 71.8
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.3e-56 222.6 179 68.7
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 2.3e-56 222.6 176 67.6
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 2.3e-56 222.6 176 67.6
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 2.3e-56 222.6 174 70.7
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 2.3e-56 222.6 176 70.5
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 3.0e-56 222.2 177 67.8
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 5.2e-56 221.5 177 67.2
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 6.8e-56 221.1 176 69.9
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 6.8e-56 221.1 178 69.1
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 1.2e-55 220.3 177 66.7
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 1.5e-55 219.9 176 66.5
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 2.0e-55 219.5 176 67.0
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 2.6e-55 219.2 176 67.0
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 3.4e-55 218.8 176 66.5
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 9.8e-55 217.2 178 70.2
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 6.4e-54 214.5 176 65.9
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 6.4e-54 214.5 176 65.9
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-53 213.8 176 65.9
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.1e-53 213.8 178 68.0
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 1.4e-53 213.4 176 67.6
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 1.4e-53 213.4 187 63.6
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 2.0e-52 209.5 182 67.0
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 2.7e-52 209.1 176 64.2
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 3.5e-52 208.8 176 64.8
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 4.6e-52 208.4 147 80.3
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.0e-51 207.2 176 64.2
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.3e-51 206.8 177 65.5
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 3.9e-51 205.3 181 64.1
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 3.6e-49 198.7 147 78.2
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 2.3e-48 196.1 180 61.7
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 2.0e-47 193.0 127 78.0
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 2.9e-46 189.1 151 73.5
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 4.1e-45 185.3 176 58.0
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 7.0e-45 184.5 176 59.7
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 7.0e-45 184.5 176 59.7
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.2e-44 183.7 163 62.0
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 2.7e-44 182.6 133 70.7
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 1.3e-43 180.3 162 61.7
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 1.7e-38 163.3 143 60.8
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 2.9e-38 162.5 146 65.8
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 3.7e-38 162.2 130 72.3
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 1.1e-37 160.6 146 63.0
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.2e-36 157.1 146 62.3
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 1.6e-33 146.7 82 80.5
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 2.4e-29 132.9 74 85.1
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 5.4e-29 131.7 74 83.8
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 7.1e-29 131.3 122 57.4
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 7.1e-29 131.3 72 86.1
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 2.7e-28 129.4 74 82.4
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 2.5e-26 122.9 178 48.9
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.6e-25 120.2 123 49.6
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 3.6e-25 119.0 104 69.2
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 4.6e-20 102.1 74 67.6
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 7.8e-20 101.3 130 49.2
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 1.7e-19 100.1 73 71.2
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 2.5e-18 96.3 112 55.4
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.3e-17 94.0 113 59.3
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 1.5e-15 87.0 85 55.3
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 2.0e-15 86.7 119 51.3
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 1.1e-13 80.9 144 37.5
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 4.2e-13 79.0 145 41.4
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 1.3e-11 73.9 104 49.0
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 4.0e-08 62.4 30 86.7


User provided reference genes

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