Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 2.5e-201 705.3 365 100.0
Cfa019942 Carpinus fangiana HOM05D020463 ORTHO05D022255 6.5e-61 238.8 211 66.4
Cfa007688 Carpinus fangiana HOM05D011725 ORTHO05D016914 8.9e-26 122.1 213 39.4
Cfa005675 Carpinus fangiana HOM05D011725 ORTHO05D016914 3.4e-25 120.2 214 38.8
Haze_06051 Corylus avellana HOM05D020463 ORTHO05D022255 3.4e-25 120.2 169 46.7
Cfa017593 Carpinus fangiana HOM05D011725 ORTHO05D016914 7.5e-25 119.0 213 39.4
Cfa005740 Carpinus fangiana HOM05D020463 ORTHO05D022255 9.8e-25 118.6 166 46.4
Cfa002544 Carpinus fangiana HOM05D011725 ORTHO05D016914 1.3e-24 118.2 213 38.0
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 3.9e-21 106.7 68 77.9
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.1e-20 105.1 54 92.6
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.5e-20 104.8 54 94.4
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.5e-20 104.8 54 94.4
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.5e-20 104.8 54 94.4
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.9e-20 104.4 54 92.6
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 1.9e-20 104.4 54 94.4
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.5e-20 104.0 54 92.6
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.5e-20 104.0 54 92.6
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 3.3e-20 103.6 54 92.6
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 3.3e-20 103.6 54 92.6
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 3.3e-20 103.6 54 92.6
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 3.3e-20 103.6 54 92.6
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 3.3e-20 103.6 54 90.7
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 4.3e-20 103.2 54 92.6
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 4.3e-20 103.2 54 92.6
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 4.3e-20 103.2 54 90.7
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 5.6e-20 102.8 54 90.7
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 5.6e-20 102.8 54 88.9
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 5.6e-20 102.8 54 92.6
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 7.3e-20 102.4 54 90.7
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 7.3e-20 102.4 54 92.6
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 7.3e-20 102.4 54 92.6
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 7.3e-20 102.4 56 85.7
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 7.3e-20 102.4 54 92.6
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 7.3e-20 102.4 54 90.7
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 7.3e-20 102.4 54 92.6
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 7.3e-20 102.4 54 90.7
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 7.3e-20 102.4 54 90.7
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 9.5e-20 102.1 54 92.6
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 9.5e-20 102.1 54 88.9
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 9.5e-20 102.1 54 90.7
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 9.5e-20 102.1 54 90.7
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.2e-19 101.7 54 90.7
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 1.6e-19 101.3 54 90.7
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 2.1e-19 100.9 54 90.7
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 3.6e-19 100.1 54 88.9
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 3.6e-19 100.1 54 88.9
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 6.2e-19 99.4 54 88.9
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.1e-18 98.6 54 87.0
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.1e-18 98.6 54 87.0
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.1e-18 98.6 54 87.0
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.1e-18 98.6 54 87.0
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.1e-18 98.6 54 90.7
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.1e-18 98.6 54 90.7
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.1e-18 98.6 54 90.7
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.1e-18 98.6 54 87.0
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.1e-18 98.6 54 90.7
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.4e-18 98.2 54 87.0
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.4e-18 98.2 54 85.2
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.8e-18 97.8 54 85.2
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 3.1e-18 97.1 54 83.3
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 4.0e-18 96.7 54 83.3
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 4.0e-18 96.7 54 83.3
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 6.8e-18 95.9 54 87.0
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 6.8e-18 95.9 54 83.3
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 6.8e-18 95.9 54 87.0
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 8.9e-18 95.5 54 83.3
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 8.9e-18 95.5 54 81.5
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 8.9e-18 95.5 54 81.5
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 5.8e-17 92.8 54 81.5
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 7.6e-17 92.4 54 79.6
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 9.9e-17 92.0 54 83.3
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 9.9e-17 92.0 54 83.3
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 9.9e-17 92.0 54 83.3
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 9.9e-17 92.0 54 83.3
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 9.9e-17 92.0 54 83.3
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 9.9e-17 92.0 54 83.3
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.3e-16 91.7 54 83.3
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.2e-16 90.9 54 79.6
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 2.2e-16 90.9 54 79.6
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 2.9e-16 90.5 54 81.5
Haze_08961 Corylus avellana HOM05D020463 ORTHO05D022255 6.4e-16 89.4 75 56.0
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 8.4e-16 89.0 54 79.6
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 1.4e-15 88.2 54 74.1
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.9e-15 87.8 54 77.8
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 2.4e-15 87.4 54 74.1
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 2.4e-15 87.4 54 74.1
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 2.4e-15 87.4 93 55.9
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.4e-15 87.4 56 69.6
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 2.4e-15 87.4 54 75.9
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 3.2e-15 87.0 56 73.2
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 2.1e-14 84.3 54 72.2
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 2.1e-14 84.3 54 72.2
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 3.5e-14 83.6 54 68.5
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 4.6e-14 83.2 54 72.2
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 4.6e-14 83.2 54 70.4
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 2.3e-13 80.9 54 68.5
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 3.9e-13 80.1 56 67.9
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.5e-12 78.2 54 66.7
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.9e-12 77.8 53 67.9
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 9.6e-12 75.5 54 63.0
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 1.6e-11 74.7 54 63.0
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 2.1e-11 74.3 54 70.4
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 2.8e-11 73.9 40 80.0
Cfa002300 Carpinus fangiana HOM05D020463 ORTHO05D022255 4.7e-11 73.2 52 65.4
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 1.1e-10 72.0 54 59.3
QL10p052222 Quercus lobata HOM05D003171 ORTHO05D000921 1.4e-10 71.6 206 30.1
Prupe.7G061200 Prunus persica HOM05D003171 ORTHO05D000921 1.8e-10 71.2 211 28.4
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 2.4e-10 70.9 54 59.3
TWI34G0686 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 2.4e-10 70.9 211 28.9
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 4.0e-10 70.1 54 59.3
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 4.0e-10 70.1 54 59.3
TWI36G0176 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 6.8e-10 69.3 211 28.9
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.5e-09 68.2 54 57.4
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.5e-09 68.2 54 57.4
Ca_18689_v3 Cicer arietinum L. HOM05D011725 ORTHO05D000921 2.6e-09 67.4 213 27.7
Dinv05111 Davidia involucrata HOM05D008473 ORTHO05D000921 4.4e-09 66.6 51 56.9
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 5.8e-09 66.2 56 53.6
Dinv11570 Davidia involucrata HOM05D008473 ORTHO05D000921 5.8e-09 66.2 213 29.6
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 9.9e-09 65.5 83 45.8
Hma1.2p1_0471F.1_g159430 Hydrangea macrophylla HOM05D003171 ORTHO05D000921 9.9e-09 65.5 51 56.9
PSO170G3394 Papaver somniferum HOM05D003171 ORTHO05D000921 1.3e-08 65.1 211 27.5
PSO700G0266 Papaver somniferum HOM05D003171 ORTHO05D000921 1.3e-08 65.1 211 27.5
TWI38G2389 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 1.3e-08 65.1 211 26.5
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.7e-08 64.7 38 81.6
QL10p054458 Quercus lobata HOM05D003171 ORTHO05D000921 1.7e-08 64.7 205 29.3
PSO724G0339 Papaver somniferum HOM05D003171 ORTHO05D000921 2.2e-08 64.3 211 27.0
QL10p052249 Quercus lobata HOM05D003171 ORTHO05D000921 2.2e-08 64.3 205 29.3
Aqoxy5G02246 Aquilegia oxysepala HOM05D000034 ORTHO05D000037 4.9e-08 63.2 58 50.0
Aqoxy2G01241 Aquilegia oxysepala HOM05D003171 ORTHO05D000921 6.4e-08 62.8 58 50.0
Ca_02097_v3 Cicer arietinum L. HOM05D011725 ORTHO05D000921 6.4e-08 62.8 209 27.8
TWI63G0719 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 1.1e-07 62.0 53 45.3
Hma1.2p1_1940F.1_g308350 Hydrangea macrophylla HOM05D003171 ORTHO05D000921 1.4e-07 61.6 219 27.4
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 2.4e-07 60.8 31 83.9
CANSAT21G0626 Cannabis sativa HOM05D000665 ORTHO05D000921 5.4e-07 59.7 211 27.0
Dinv03278 Davidia involucrata HOM05D008473 ORTHO05D000921 7.1e-07 59.3 213 27.7
Dinv20245 Davidia involucrata HOM05D008473 ORTHO05D000921 7.1e-07 59.3 212 26.9
Oeu041025.1 Olea europaea HOM05D000254 ORTHO05D000921 7.1e-07 59.3 55 50.9
PSO675G2453 Papaver somniferum HOM05D003171 ORTHO05D000921 7.1e-07 59.3 52 51.9
Haze_01657 Corylus avellana HOM05D011725 ORTHO05D016914 9.3e-07 58.9 126 32.5
QL05p062248 Quercus lobata HOM05D003171 ORTHO05D000921 9.3e-07 58.9 208 27.9
PSO832G2613 Papaver somniferum HOM05D003171 ORTHO05D000921 1.6e-06 58.2 211 25.6
QL05p040133 Quercus lobata HOM05D003171 ORTHO05D000921 1.6e-06 58.2 208 27.4
Ca_19984_v3 Cicer arietinum L. HOM05D011725 ORTHO05D000921 2.1e-06 57.8 215 26.0
Medtr4g051480 Medicago truncatula HOM05D001243 ORTHO05D000843 2.7e-06 57.4 217 25.3
Medtr4g092300 Medicago truncatula HOM05D001243 ORTHO05D000843 2.7e-06 57.4 217 25.3
QL09p025174 Quercus lobata HOM05D003171 ORTHO05D000921 2.7e-06 57.4 208 27.4
RcHm_v2.0_Chr1g0354771 Rosa chinensis HOM05D003171 ORTHO05D000921 2.7e-06 57.4 62 40.3
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 2.7e-06 57.4 50 58.0
QL02p070399 Quercus lobata HOM05D003171 ORTHO05D000921 3.5e-06 57.0 208 27.4
QL09p032434 Quercus lobata HOM05D003171 ORTHO05D000921 3.5e-06 57.0 208 27.4
QL10p053818 Quercus lobata HOM05D003171 ORTHO05D000921 3.5e-06 57.0 208 27.4
COL.COLO4_15155 Corchorus olitorius HOM05D003171 ORTHO05D000921 4.6e-06 56.6 259 25.1
CANSAT25G2398 Cannabis sativa HOM05D000665 ORTHO05D000921 6.0e-06 56.2 211 27.0
FAN22G1922 Fragaria x ananassa HOM05D003171 ORTHO05D000921 6.0e-06 56.2 92 32.6
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 6.0e-06 56.2 54 48.1
Oeu059221.1 Olea europaea HOM05D003171 ORTHO05D000921 7.8e-06 55.8 214 27.1


User provided reference genes

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