Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002881 Carpinus fangiana HOM05D000010 ORTHO05D034147 1.6e-99 366.3 216 100.0
Haze_25207 Corylus avellana HOM05D000010 ORTHO05D034147 7.7e-78 294.3 214 86.4
Haze_08548 Corylus avellana HOM05D000010 ORTHO05D034147 1.3e-77 293.5 217 85.7
Haze_13947 Corylus avellana HOM05D000010 ORTHO05D000063 2.1e-35 153.3 205 47.8
Cfa008091 Carpinus fangiana HOM05D000010 ORTHO05D009770 5.3e-34 148.7 206 47.1
Cfa002608 Carpinus fangiana HOM05D000010 ORTHO05D000063 2.4e-23 113.2 149 47.0
Prupe.8G035400 Prunus persica HOM05D000010 ORTHO05D000063 6.7e-21 105.1 204 35.3
CiPaw.04G083400 Carya illinoinensis HOM05D000010 ORTHO05D000063 9.6e-20 101.3 144 46.5
Prupe.7G092400 Prunus persica HOM05D000010 ORTHO05D000063 9.6e-20 101.3 205 35.1
Prupe.8G035300 Prunus persica HOM05D000010 ORTHO05D000063 1.4e-18 97.4 206 35.0
MD05G1029800 Malus domestica HOM05D000010 ORTHO05D000063 1.2e-17 94.4 204 33.3
CiPaw.03G122600 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.3e-16 90.9 137 44.5
CiPaw.04G084300 Carya illinoinensis HOM05D000010 ORTHO05D000063 2.2e-16 90.1 67 64.2
Ciclev10001200m.g Citrus clementina HOM05D000010 ORTHO05D000063 2.2e-16 90.1 129 48.1
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 4.9e-16 89.0 197 33.5
MD10G1030400 Malus domestica HOM05D000010 ORTHO05D000063 6.5e-16 88.6 200 33.0
QL06p028772 Quercus lobata HOM05D000010 ORTHO05D000063 8.4e-16 88.2 102 50.0
CiPaw.04G083100 Carya illinoinensis HOM05D000010 ORTHO05D000063 2.5e-15 86.7 130 43.1
Psat0s145g0160 Pisum sativum HOM05D000010 ORTHO05D000063 5.5e-15 85.5 131 41.2
Ca_16940_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 3.5e-14 82.8 130 41.5
Ca_16959_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 3.5e-14 82.8 130 41.5
RcHm_v2.0_Chr6g0274751 Rosa chinensis HOM05D000010 ORTHO05D000063 3.5e-14 82.8 202 29.7
arahy.Tifrunner.gnm1.ann1.MI72XM Arachis hypogaea HOM05D000010 ORTHO05D000063 6.0e-14 82.0 113 42.5
CiPaw.04G083300 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.0e-13 81.3 130 41.5
arahy.Tifrunner.gnm1.ann1.G1V3KR Arachis hypogaea HOM05D000010 ORTHO05D000063 1.3e-13 80.9 113 42.5
QL06p028786 Quercus lobata HOM05D000010 ORTHO05D000063 3.9e-13 79.3 77 58.4
Lalb_Chr23g0272571 Lupinus albus HOM05D000010 ORTHO05D000063 7.4e-12 75.1 130 39.2
FvH4_2g13320 Fragaria vesca HOM05D000010 ORTHO05D000063 9.6e-12 74.7 123 37.4
FAN24G2417 Fragaria x ananassa HOM05D000010 ORTHO05D000063 9.6e-12 74.7 123 37.4
FAN20G0100 Fragaria x ananassa HOM05D000010 ORTHO05D000063 2.1e-11 73.6 125 37.6
CsaV3_6G041640 Cucumis sativus L. HOM05D000010 ORTHO05D000063 2.8e-11 73.2 133 37.6
Medtr3g096140 Medicago truncatula HOM05D000010 ORTHO05D000063 2.8e-11 73.2 127 38.6
ClCG01G015420 Citrullus lanatus HOM05D000010 ORTHO05D000063 4.8e-11 72.4 126 40.5
MELO3C008056.2 Cucumis melo HOM05D000010 ORTHO05D000063 4.8e-11 72.4 131 36.6
Sp6g33980 Schrenkiella parvula HOM05D000010 ORTHO05D000063 1.4e-10 70.9 136 36.8
Glyma.04G213300 Glycine max HOM05D000010 ORTHO05D000063 1.8e-10 70.5 87 44.8
Prupe.8G035500 Prunus persica HOM05D000010 ORTHO05D000063 2.4e-10 70.1 121 38.0
THA.LOC104800043 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 2.4e-10 70.1 130 37.7
Glyma.06G152900 Glycine max HOM05D000010 ORTHO05D000063 3.1e-10 69.7 87 44.8
Lj1g0002215 Lotus japonicus HOM05D000010 ORTHO05D000063 3.1e-10 69.7 87 46.0
Manes.13G083400 Manihot esculenta HOM05D000010 ORTHO05D000063 3.1e-10 69.7 129 40.3
MD04G1043700 Malus domestica HOM05D000010 ORTHO05D000063 5.3e-10 68.9 131 38.2
VMungo1309G2104 Vigna mungo HOM05D000010 ORTHO05D000063 5.3e-10 68.9 87 41.4
Dinv06069 Davidia involucrata HOM05D000010 ORTHO05D000063 6.9e-10 68.6 126 38.9
A10p27910 Brassica napus HOM05D000010 ORTHO05D000063 9.0e-10 68.2 145 32.4
BolC9t59561H Brassica oleracea HOM05D000010 ORTHO05D000063 9.0e-10 68.2 143 31.5
BraA10t44840Z Brassica rapa HOM05D000010 ORTHO05D000063 9.0e-10 68.2 145 32.4
CANSAT01G0333 Cannabis sativa HOM05D000010 ORTHO05D000063 9.0e-10 68.2 108 37.0
Lalb_Chr08g0238381 Lupinus albus HOM05D000010 ORTHO05D000063 9.0e-10 68.2 78 51.3
Thecc.01G129000 Theobroma cacao HOM05D000010 ORTHO05D000063 9.0e-10 68.2 37 78.4
A03p04110 Brassica napus HOM05D000010 ORTHO05D000063 1.2e-09 67.8 138 33.3
Thecc.01G128500 Theobroma cacao HOM05D000010 ORTHO05D000063 1.2e-09 67.8 156 33.3
Thhalv10013785m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 1.5e-09 67.4 80 47.5
Sed0017960 Sechium edule HOM05D000010 ORTHO05D000063 1.5e-09 67.4 112 42.9
AT5G09330 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 2.6e-09 66.6 135 31.1
BcaB08g37214 Brassica carinata HOM05D000010 ORTHO05D000063 3.4e-09 66.2 147 30.6
C09p68020 Brassica napus HOM05D000010 ORTHO05D000063 3.4e-09 66.2 147 30.6
BraA03t09754Z Brassica rapa HOM05D000010 ORTHO05D000063 3.4e-09 66.2 138 34.1
Thecc.06G072300 Theobroma cacao HOM05D000010 ORTHO05D000063 3.4e-09 66.2 118 36.4
Thhalv10004501m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 4.5e-09 65.9 133 36.1
Manes.12G154500 Manihot esculenta HOM05D000010 ORTHO05D000063 4.5e-09 65.9 135 34.8
Oeu050137.2 Olea europaea HOM05D000010 ORTHO05D000063 4.5e-09 65.9 123 39.8
Sp2g27130 Schrenkiella parvula HOM05D000010 ORTHO05D000063 4.5e-09 65.9 117 35.0
Phvul.009G150100 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 7.6e-09 65.1 87 41.4
Duzib147G1084 Durio zibethinus HOM05D000010 ORTHO05D000063 1.0e-08 64.7 132 37.1
AL6G19730 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 1.3e-08 64.3 135 29.6
Cc07_g18360 Coffea canephora HOM05D000010 ORTHO05D000063 1.3e-08 64.3 151 35.1
Aa31LG3G17700 Aethionema arabicum HOM05D000010 ORTHO05D000063 1.7e-08 63.9 128 35.2
A06p30770 Brassica napus HOM05D000010 ORTHO05D000063 1.7e-08 63.9 124 31.5
BraA06t26019Z Brassica rapa HOM05D000010 ORTHO05D000063 1.7e-08 63.9 124 31.5
Gohir.A11G056400 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.7e-08 63.9 77 44.2
Gorai.007G065300 Gossypium raimondii HOM05D000010 ORTHO05D000063 1.7e-08 63.9 77 44.2
GSVIVG01026495001 Vitis vinifera HOM05D000010 ORTHO05D000063 1.7e-08 63.9 208 27.4
BcaB05g21559 Brassica carinata HOM05D000010 ORTHO05D000063 2.2e-08 63.5 94 38.3
Duzib187G0620 Durio zibethinus HOM05D000010 ORTHO05D000063 2.2e-08 63.5 79 45.6
Eucgr.I00213 Eucalyptus grandis HOM05D000010 ORTHO05D000063 2.2e-08 63.5 49 57.1
Gohir.D11G060600 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.2e-08 63.5 77 44.2
TWI23G1302 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 3.8e-08 62.8 59 54.2
Ca_17641_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 5.0e-08 62.4 121 38.8
Carub.0006s0788 Capsella rubella HOM05D000010 ORTHO05D000063 8.5e-08 61.6 137 30.7
Cpa.g.sc42.145 Carica papaya HOM05D000010 ORTHO05D000063 1.1e-07 61.2 127 31.5
Dinv24345 Davidia involucrata HOM05D000010 ORTHO05D000063 1.1e-07 61.2 127 41.7
TWI23G0696 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 1.1e-07 61.2 29 82.8
CARHR204060 Cardamine hirsuta HOM05D000010 ORTHO05D000063 1.4e-07 60.8 138 30.4
Sed0006084 Sechium edule HOM05D000010 ORTHO05D000063 1.4e-07 60.8 111 34.2
TWI39G0600 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 1.4e-07 60.8 52 57.7
TAR381G1153 Trochodendron aralioides HOM05D000010 ORTHO05D000063 1.4e-07 60.8 47 61.7
BolC2t06341H Brassica oleracea HOM05D000010 ORTHO05D000063 1.9e-07 60.5 79 43.0
THA.LOC104819339 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 1.9e-07 60.5 83 43.4
BcaC01g02662 Brassica carinata HOM05D000010 ORTHO05D000063 2.5e-07 60.1 127 31.5
C03p62210 Brassica napus HOM05D000010 ORTHO05D000063 2.5e-07 60.1 127 31.5
BolC3t18484H Brassica oleracea HOM05D000010 ORTHO05D000063 2.5e-07 60.1 127 31.5
Carub.0008s2484 Capsella rubella HOM05D000010 ORTHO05D000063 3.2e-07 59.7 117 35.9
CARHR277970 Cardamine hirsuta HOM05D000010 ORTHO05D000063 3.2e-07 59.7 83 43.4
Oeu033659.1 Olea europaea HOM05D000010 ORTHO05D000063 3.2e-07 59.7 127 36.2
MSTRG.2749 Avicennia marina HOM05D000010 ORTHO05D000063 4.2e-07 59.3 116 36.2
Peaxi162Scf00589g00322 Petunia axillaris HOM05D000010 ORTHO05D000063 4.2e-07 59.3 66 51.5
RcHm_v2.0_Chr6g0274761 Rosa chinensis HOM05D000010 ORTHO05D000063 4.2e-07 59.3 48 62.5
Thecc.06G071800 Theobroma cacao HOM05D000010 ORTHO05D009770 4.2e-07 59.3 70 47.1
AL8G41320 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 5.5e-07 58.9 134 35.8
TPR.G17151 Trifolium pratense HOM05D000010 ORTHO05D000063 5.5e-07 58.9 28 85.7
C03p04570 Brassica napus HOM05D000010 ORTHO05D000063 7.2e-07 58.5 76 44.7
BolC3t12988H Brassica oleracea HOM05D000010 ORTHO05D000063 7.2e-07 58.5 76 44.7
Lj4g0015713 Lotus japonicus HOM05D000010 ORTHO05D000063 7.2e-07 58.5 121 37.2
Oeu042273.2 Olea europaea HOM05D000010 ORTHO05D000063 7.2e-07 58.5 133 33.8
PGR102G1408 Punica granatum HOM05D000010 ORTHO05D000063 7.2e-07 58.5 28 82.1
CSS0030755 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 9.3e-07 58.2 106 34.9
Medtr8g063550 Medicago truncatula HOM05D000010 ORTHO05D000063 1.6e-06 57.4 28 85.7
Medtr8g093580 Medicago truncatula HOM05D000010 ORTHO05D000063 1.6e-06 57.4 28 85.7
TPR.G37364 Trifolium pratense HOM05D004025 ORTHO05D004929 1.6e-06 57.4 28 85.7
MSTRG.23448 Avicennia marina HOM05D000010 ORTHO05D000063 2.1e-06 57.0 129 31.8
Lj4A845T51 Lonicera japonica HOM05D000010 ORTHO05D000063 2.1e-06 57.0 124 35.5
Lj2A605G50 Lonicera japonica HOM05D000010 ORTHO05D000063 2.7e-06 56.6 121 37.2
Lj5g0009860 Lotus japonicus HOM05D000010 ORTHO05D004316 2.7e-06 56.6 31 74.2
Manes.02G186500 Manihot esculenta HOM05D000010 ORTHO05D004316 2.7e-06 56.6 57 49.1
ATR0043G032 Amborella trichopoda HOM05D000010 ORTHO05D000063 3.6e-06 56.2 51 51.0
BcaC03g13248 Brassica carinata HOM05D000010 ORTHO05D000063 3.6e-06 56.2 79 43.0
C02p03800 Brassica napus HOM05D000010 ORTHO05D000063 3.6e-06 56.2 79 43.0
CAN.G1010.3 Capsicum annuum HOM05D000010 ORTHO05D004316 3.6e-06 56.2 108 35.2
Nn1g06246 Nelumbo nucifera HOM05D000010 ORTHO05D000063 3.6e-06 56.2 114 36.0
Peaxi162Scf00583g00020 Petunia axillaris HOM05D000010 ORTHO05D000063 3.6e-06 56.2 99 39.4
BraA02t04975Z Brassica rapa HOM05D000010 ORTHO05D000063 4.6e-06 55.8 79 41.8
COL.COLO4_15623 Corchorus olitorius HOM05D000010 ORTHO05D000063 4.6e-06 55.8 38 63.2
Dinv36367 Davidia involucrata HOM05D000010 ORTHO05D000063 4.6e-06 55.8 121 32.2
Dinv41013 Davidia involucrata HOM05D000010 ORTHO05D004316 4.6e-06 55.8 58 46.6
FvH4_2g13330 Fragaria vesca HOM05D000010 ORTHO05D000063 4.6e-06 55.8 29 72.4
FAN15G3459 Fragaria x ananassa HOM05D000010 ORTHO05D000063 4.6e-06 55.8 29 72.4
FAN24G1093 Fragaria x ananassa HOM05D000010 ORTHO05D000063 4.6e-06 55.8 29 72.4
FAN27G0827 Fragaria x ananassa HOM05D000010 ORTHO05D000063 4.6e-06 55.8 29 72.4
HanXRQChr05g0162521 Helianthus annuus HOM05D000010 ORTHO05D004316 4.6e-06 55.8 48 50.0
Solyc11g005920.3 Solanum lycopersicum HOM05D000010 ORTHO05D000063 4.6e-06 55.8 28 82.1
Sopen11g001860 Solanum pennellii HOM05D000010 ORTHO05D000063 4.6e-06 55.8 28 82.1
PGSC0003DMG400028662 Solanum tuberosum HOM05D000010 ORTHO05D000063 4.6e-06 55.8 28 82.1
Aqoxy5G00913 Aquilegia oxysepala HOM05D000010 ORTHO05D004316 6.1e-06 55.5 31 67.7
DCAR_014340 Daucus carota HOM05D000010 ORTHO05D000063 6.1e-06 55.5 76 46.1
Nn5g28579 Nelumbo nucifera HOM05D000010 ORTHO05D000063 6.1e-06 55.5 41 56.1
PSO170G2509 Papaver somniferum HOM05D000010 ORTHO05D000063 6.1e-06 55.5 107 33.6
Phvul.002G271700 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 6.1e-06 55.5 127 33.9
TPR.G23152 Trifolium pratense HOM05D000010 ORTHO05D004316 6.1e-06 55.5 31 74.2
Actinidia18551 Actinidia chinensis HOM05D000010 ORTHO05D000063 7.9e-06 55.1 121 33.9
Nitab4.5_0002667g0040 Nicotiana tabacum HOM05D000010 ORTHO05D000063 7.9e-06 55.1 28 82.1
Nitab4.5_0013695g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000063 7.9e-06 55.1 28 82.1
Psat7g045680 Pisum sativum HOM05D000010 ORTHO05D000063 7.9e-06 55.1 28 82.1
TWI32G0847 Tripterygium wilfordii HOM05D000010 ORTHO05D004316 7.9e-06 55.1 35 62.9
TAR625G1518 Trochodendron aralioides HOM05D000010 ORTHO05D000063 7.9e-06 55.1 47 55.3


User provided reference genes

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