Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 3.0e-40 167.9 77 100.0
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 7.6e-36 153.3 77 93.5
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.9e-34 148.7 76 84.2
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.8e-30 134.0 70 84.3
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.9e-29 130.2 77 77.9
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 1.0e-27 126.3 74 73.0
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.5e-27 123.6 75 73.3
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.5e-27 123.6 75 73.3
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 6.5e-27 123.6 75 73.3
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 1.0e-24 116.3 78 71.8
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.3e-24 115.2 74 64.9
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 2.3e-24 115.2 77 68.8
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.0e-24 114.8 67 77.6
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 5.1e-24 114.0 79 69.6
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.7e-24 113.6 74 64.9
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 6.7e-24 113.6 74 64.9
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 1.9e-23 112.1 77 66.2
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.3e-23 110.9 73 67.1
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.3e-22 109.4 78 67.9
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 2.8e-22 108.2 75 65.3
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 8.2e-22 106.7 77 64.9
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 8.2e-22 106.7 69 72.5
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.4e-21 105.9 76 64.5
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.8e-21 105.5 78 64.1
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 1.8e-21 105.5 95 62.1
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 3.1e-21 104.8 95 61.1
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.1e-21 104.8 95 61.1
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.1e-21 104.8 95 61.1
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.1e-21 104.4 78 64.1
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.1e-21 104.4 78 64.1
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 4.1e-21 104.4 83 67.5
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 4.1e-21 104.4 72 68.1
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 6.9e-21 103.6 95 60.0
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 9.0e-21 103.2 78 60.3
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.5e-20 102.4 74 64.9
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 1.5e-20 102.4 74 64.9
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 2.0e-20 102.1 72 68.1
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 5.9e-20 100.5 77 62.3
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.0e-19 99.8 77 61.0
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.3e-19 99.4 76 57.9
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.2e-19 98.6 78 57.7
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 1.4e-18 95.9 77 57.1
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 1.2e-17 92.8 77 55.8
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 3.6e-17 91.3 83 56.6
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 1.0e-16 89.7 51 76.5
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.8e-16 89.0 88 58.0
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 3.0e-16 88.2 77 51.9
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.1e-15 86.3 74 60.8
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 1.6e-14 82.4 50 74.0
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 2.2e-14 82.0 48 77.1
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 4.8e-14 80.9 66 60.6
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-13 79.7 80 56.2
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 1.1e-13 79.7 46 78.3
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.8e-13 79.0 66 59.1
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.4e-13 78.6 68 57.4
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.4e-13 78.6 80 51.2
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 3.1e-13 78.2 65 55.4
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 4.1e-13 77.8 69 53.6
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 9.1e-13 76.6 75 53.3
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.2e-12 76.3 80 52.5
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-12 76.3 80 53.8
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.2e-12 76.3 80 53.8
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 1.5e-12 75.9 80 53.8
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 1.5e-12 75.9 80 53.8
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.6e-12 75.1 67 53.7
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 3.4e-12 74.7 78 47.4
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 3.4e-12 74.7 78 47.4
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 3.4e-12 74.7 78 47.4
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 3.4e-12 74.7 60 60.0
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 4.5e-12 74.3 74 51.4
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 4.5e-12 74.3 74 51.4
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 4.5e-12 74.3 74 51.4
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 4.5e-12 74.3 74 51.4
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 5.9e-12 73.9 67 55.2
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 5.9e-12 73.9 72 52.8
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 7.7e-12 73.6 60 61.7
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 7.7e-12 73.6 66 56.1
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 1.0e-11 73.2 80 47.5
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 1.0e-11 73.2 80 47.5
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-11 72.0 76 53.9
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-11 72.0 76 53.9
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.9e-11 71.6 77 48.1
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 2.9e-11 71.6 72 51.4
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 3.8e-11 71.2 71 54.9
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 3.8e-11 71.2 74 50.0
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 8.5e-11 70.1 67 52.2
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 8.5e-11 70.1 76 52.6
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 8.5e-11 70.1 76 52.6
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 8.5e-11 70.1 67 55.2
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 1.1e-10 69.7 70 50.0
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 1.4e-10 69.3 71 47.9
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.4e-10 69.3 73 52.1
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.4e-10 69.3 68 55.9
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 1.9e-10 68.9 75 46.7
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 1.9e-10 68.9 70 54.3
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.9e-10 68.9 80 47.5
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.9e-10 68.9 64 54.7
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 2.5e-10 68.6 76 52.6
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 2.5e-10 68.6 76 52.6
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 2.5e-10 68.6 76 52.6
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 2.5e-10 68.6 63 52.4
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.5e-10 68.6 71 52.1
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 4.2e-10 67.8 70 50.0
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 5.5e-10 67.4 69 47.8
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 9.4e-10 66.6 83 41.0
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 9.4e-10 66.6 83 41.0
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 9.4e-10 66.6 73 52.1
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 9.4e-10 66.6 62 53.2
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-09 65.9 72 52.8
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-09 65.9 72 52.8
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 1.6e-09 65.9 72 52.8
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.6e-09 65.9 74 55.4
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 1.6e-09 65.9 72 55.6
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.6e-09 65.9 61 54.1
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.6e-09 65.9 71 47.9
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 1.6e-09 65.9 74 51.4
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 4.6e-09 64.3 67 52.2
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 6.1e-09 63.9 84 44.0
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 6.1e-09 63.9 79 43.0
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 6.1e-09 63.9 79 49.4
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.4e-08 62.8 87 40.2
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.3e-08 62.0 90 37.8
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 3.0e-08 61.6 84 42.9
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.0e-08 61.6 72 44.4
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 6.7e-08 60.5 53 54.7
Gohir.A05G242250 Gossypium hirsutum HOM05D037961 ORTHO05D004852 8.8e-08 60.1 79 48.1
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 8.8e-08 60.1 68 50.0
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-07 59.7 58 46.6
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 1.1e-07 59.7 34 70.6
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.1e-07 59.7 76 47.4
Gorai.009G252900 Gossypium raimondii HOM05D037961 ORTHO05D004852 1.1e-07 59.7 79 48.1
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 1.1e-07 59.7 70 52.9
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 2.6e-07 58.5 74 47.3
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 5.7e-07 57.4 60 45.0
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 5.7e-07 57.4 60 45.0
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 9.7e-07 56.6 64 48.4
Os04g0418100 Oryza sativa ssp. japonica HOM05D047234 ORTHO05D004852 9.7e-07 56.6 49 59.2
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-06 56.2 27 85.2
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-06 56.2 27 85.2
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-06 56.2 27 85.2
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.2e-06 55.5 30 76.7
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 2.8e-06 55.1 52 46.2
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 2.8e-06 55.1 30 76.7
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 3.7e-06 54.7 25 88.0
SGA_v2.0_scaffold137G35143 Striga asiatica HOM05D004540 ORTHO05D004852 3.7e-06 54.7 68 44.1
Carub.0006s0822 Capsella rubella HOM05D004540 ORTHO05D004852 6.3e-06 53.9 33 69.7
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 8.2e-06 53.5 52 46.2


User provided reference genes

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