Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 2.9e-177 625.2 328 100.0
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.1e-165 586.6 326 94.5
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.4e-149 531.9 328 84.1
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 8.5e-145 517.3 328 82.6
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 6.6e-137 491.1 330 77.6
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 9.5e-136 487.3 333 78.4
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.8e-135 485.7 333 77.2
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 3.1e-126 455.7 333 73.0
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 9.8e-125 450.7 333 74.2
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.7e-124 449.9 334 72.8
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.2e-124 449.5 330 71.5
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 3.7e-124 448.7 334 71.0
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 6.4e-124 448.0 334 73.1
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 8.3e-124 447.6 333 70.3
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 3.2e-123 445.7 330 70.3
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 4.1e-123 445.3 333 70.0
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 9.2e-123 444.1 325 72.3
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.6e-122 443.4 330 71.5
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.3e-121 440.3 333 68.2
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 3.9e-121 438.7 333 67.9
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 5.0e-121 438.3 333 69.4
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 8.6e-121 437.6 333 68.8
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.5e-120 436.0 335 71.6
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 5.6e-120 434.9 330 70.6
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 9.5e-120 434.1 332 70.5
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 8.1e-119 431.0 335 68.7
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 8.1e-119 431.0 334 68.3
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 2.0e-117 426.4 333 67.0
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.2e-116 422.9 331 67.7
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.9e-116 422.5 330 68.2
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 6.4e-116 421.4 333 68.2
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 8.3e-116 421.0 333 69.1
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 8.3e-116 421.0 332 67.8
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.9e-115 419.9 330 67.9
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 2.4e-115 419.5 334 66.2
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.4e-115 418.3 330 67.6
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.7e-114 416.0 333 67.9
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.5e-114 415.6 329 68.4
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 3.5e-114 415.6 333 65.5
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.0e-114 414.8 336 66.7
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.0e-114 414.8 333 65.5
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.0e-113 414.1 335 65.7
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.0e-113 414.1 333 65.5
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 8.6e-113 411.0 339 64.6
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.5e-112 409.5 330 65.8
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.8e-111 406.0 336 66.1
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 8.1e-111 404.4 325 67.7
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.4e-110 403.7 371 62.8
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 5.2e-110 401.7 333 64.3
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 6.8e-110 401.4 318 63.5
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.8e-110 401.4 331 65.3
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 7.6e-109 397.9 334 64.7
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.7e-108 396.7 274 72.6
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.7e-108 396.7 386 57.3
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 2.9e-108 396.0 321 62.9
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.7e-108 395.6 321 62.9
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.9e-108 395.2 334 65.0
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.9e-107 393.3 329 65.3
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.2e-107 392.5 318 62.6
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 7.1e-107 391.3 338 63.6
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 7.1e-107 391.3 333 61.6
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 5.1e-105 385.2 334 62.9
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 2.8e-103 379.4 332 63.3
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 4.7e-103 378.6 273 71.8
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 3.1e-102 375.9 334 61.7
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 5.2e-102 375.2 332 62.0
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 5.2e-102 375.2 335 60.0
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 6.8e-102 374.8 334 61.4
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 8.9e-102 374.4 273 70.3
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.6e-101 372.9 331 61.6
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.2e-100 369.8 335 60.9
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.9e-100 369.4 328 59.1
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.9e-100 369.4 246 79.7
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 4.9e-100 368.6 336 58.9
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.2e-99 365.9 331 59.8
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 3.2e-99 365.9 336 62.2
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 7.1e-99 364.8 336 59.8
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 7.1e-99 364.8 335 58.5
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.2e-98 364.0 334 60.8
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.2e-98 364.0 338 61.8
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.6e-98 363.6 338 57.4
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.6e-98 363.6 336 60.4
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 3.5e-98 362.5 319 60.2
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 7.8e-98 361.3 343 59.2
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.3e-97 360.5 330 60.6
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 2.5e-96 356.3 319 59.6
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 7.3e-96 354.8 272 64.7
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 8.1e-95 351.3 335 58.8
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 4.0e-94 349.0 363 57.6
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-93 347.4 348 56.9
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.2e-93 347.4 322 58.4
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 3.4e-93 345.9 336 58.9
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 3.4e-93 345.9 329 55.0
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 1.3e-92 344.0 338 58.3
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 1.3e-92 344.0 338 58.3
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 1.3e-92 344.0 338 58.3
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.3e-92 344.0 331 55.0
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 8.4e-92 341.3 338 55.0
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.6e-90 337.0 306 61.4
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.1e-90 336.7 233 79.8
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 3.5e-90 335.9 342 53.8
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 7.9e-90 334.7 340 54.1
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 2.3e-89 333.2 378 52.9
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 3.0e-89 332.8 332 56.9
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 6.6e-89 331.6 334 56.3
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 8.7e-89 331.3 339 51.9
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 8.7e-89 331.3 345 54.2
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.1e-88 330.9 326 55.2
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.5e-88 329.7 327 55.0
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 2.5e-88 329.7 340 56.8
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 4.3e-88 328.9 338 56.2
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 4.3e-88 328.9 338 56.2
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 4.3e-88 328.9 327 56.6
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.6e-87 327.0 249 69.9
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.1e-87 326.6 339 51.0
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 2.1e-87 326.6 334 56.3
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.8e-87 325.5 339 50.7
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.4e-86 323.9 330 56.1
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 3.1e-86 322.8 336 56.0
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 2.6e-85 319.7 332 54.8
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 3.4e-85 319.3 220 73.6
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 3.8e-84 315.8 334 55.1
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.4e-83 313.9 342 53.8
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 6.0e-82 308.5 332 56.0
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.0e-81 307.8 327 51.7
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 3.9e-81 305.8 340 54.7
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 3.3e-80 302.8 325 55.7
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 9.6e-80 301.2 340 53.8
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 2.1e-79 300.1 340 53.8
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 5.3e-78 295.4 239 62.3
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.9e-75 287.0 369 49.9
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 7.9e-74 281.6 313 52.4
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.9e-73 279.3 315 52.4
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 3.1e-70 269.6 308 52.9
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 6.9e-70 268.5 325 49.8
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 9.0e-70 268.1 297 52.9
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.0e-68 264.6 324 49.7
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.1e-64 251.1 256 58.2
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.2e-59 233.0 207 65.2
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.6e-58 229.2 201 65.2
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.0e-57 228.0 201 64.7
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.0e-57 226.5 201 64.7
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.3e-55 221.1 234 52.1
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.7e-55 220.7 328 44.5
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.2e-55 220.3 163 71.2
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 6.3e-55 218.8 180 62.2
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 5.9e-53 212.2 334 43.4
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.7e-52 210.7 163 62.6
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.5e-52 208.8 172 67.4
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 4.2e-51 206.1 289 48.4
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.2e-45 188.0 332 41.0
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 2.0e-45 187.2 234 45.7
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.8e-44 183.0 146 59.6
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.7e-42 176.8 122 69.7
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.6e-42 176.4 146 67.8
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 3.3e-40 169.9 134 58.2
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.2e-36 157.1 132 65.2
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 4.2e-35 152.9 142 54.9
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 8.8e-33 145.2 209 45.5
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.2e-32 144.8 203 50.2
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.2e-31 140.6 120 58.3
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 2.1e-26 124.0 102 54.9
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.8e-25 120.9 97 63.9
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 8.6e-20 102.1 219 34.2
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.1e-18 97.4 302 30.8
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.8e-14 84.3 140 40.0
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.8e-14 84.3 59 72.9
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 7.0e-14 82.4 88 46.6
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.3e-12 78.2 60 70.0
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 1.2e-10 71.6 244 30.7
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 1.9e-06 57.8 58 53.4


User provided reference genes

Program Settings