Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002787 Carpinus fangiana HOM05D008370 ORTHO05D009732 3.7e-35 151.0 76 100.0
QL06p031372 Quercus lobata HOM05D008370 ORTHO05D009732 7.8e-17 90.1 75 66.7
CiPaw.04G088800 Carya illinoinensis HOM05D008370 ORTHO05D009732 6.8e-13 77.0 76 59.2
Cfa002786 Carpinus fangiana HOM05D008370 ORTHO05D009732 1.3e-11 72.8 71 52.1
Haze_25084 Corylus avellana HOM05D008370 ORTHO05D009732 1.3e-11 72.8 71 52.1
CiPaw.04G088900 Carya illinoinensis HOM05D008370 ORTHO05D009732 3.8e-11 71.2 75 54.7
CSS0039971 Camellia sinensis var. sinensis HOM05D008370 ORTHO05D009732 5.4e-10 67.4 77 50.6
CiPaw.03G131600 Carya illinoinensis HOM05D008370 ORTHO05D009732 1.2e-09 66.2 72 52.8
Potri.007G077300 Populus trichocarpa HOM05D008370 ORTHO05D009732 1.2e-09 66.2 77 50.6
Thecc.07G145600 Theobroma cacao HOM05D008370 ORTHO05D009732 6.0e-09 63.9 77 51.9
COL.COLO4_17423 Corchorus olitorius HOM05D008370 ORTHO05D009732 7.8e-09 63.5 77 49.4
Thecc.01G117100 Theobroma cacao HOM05D008370 ORTHO05D009732 7.8e-09 63.5 78 48.7
QL06p031379 Quercus lobata HOM05D008370 ORTHO05D009732 1.0e-08 63.2 70 45.7
Potri.005G087000 Populus trichocarpa HOM05D008370 ORTHO05D009732 2.3e-08 62.0 77 48.1
Atru.chr4.716 Acer truncatum HOM05D008370 ORTHO05D009732 3.0e-08 61.6 88 45.5
Lj4g0015780 Lotus japonicus HOM05D008370 ORTHO05D009732 3.9e-08 61.2 77 46.8
MD01G1015700 Malus domestica HOM05D008370 ORTHO05D009732 3.9e-08 61.2 80 46.2
Sabra07G0065300 Salix brachista HOM05D008370 ORTHO05D009732 3.9e-08 61.2 77 48.1
Dinv05773 Davidia involucrata HOM05D008370 ORTHO05D009732 5.1e-08 60.8 77 51.9
Prupe.6G166000 Prunus persica HOM05D015647 ORTHO05D009732 6.6e-08 60.5 86 46.5
Glyma.06G148200 Glycine max HOM05D010746 ORTHO05D009732 8.7e-08 60.1 86 44.2
Glyma.05G186300 Glycine max HOM05D008370 ORTHO05D009732 1.1e-07 59.7 78 48.7
Gohir.D03G047500 Gossypium hirsutum HOM05D008370 ORTHO05D009732 1.5e-07 59.3 79 49.4
Gorai.003G048600 Gossypium raimondii HOM05D008370 ORTHO05D009732 1.5e-07 59.3 79 49.4
arahy.Tifrunner.gnm1.ann1.R1SWRL Arachis hypogaea HOM05D010746 ORTHO05D009732 1.9e-07 58.9 86 45.3
Lj1g0003311 Lotus japonicus HOM05D008370 ORTHO05D009732 1.9e-07 58.9 83 49.4
Ciclev10026869m.g Citrus clementina HOM05D008370 ORTHO05D009732 2.5e-07 58.5 83 47.0
Gorai.002G039200 Gossypium raimondii HOM05D008370 ORTHO05D009732 2.5e-07 58.5 78 46.2
Glyma.04G217800 Glycine max HOM05D008370 ORTHO05D009732 4.3e-07 57.8 81 45.7
Glyma.08G144800 Glycine max HOM05D008370 ORTHO05D009732 4.3e-07 57.8 74 47.3
Gohir.A01G042000 Gossypium hirsutum HOM05D008370 ORTHO05D009732 4.3e-07 57.8 78 44.9
CsaV3_2G017800 Cucumis sativus L. HOM05D029062 ORTHO05D034721 5.6e-07 57.4 89 42.7
Glyma.06G148100 Glycine max HOM05D008370 ORTHO05D009732 5.6e-07 57.4 83 44.6
Psat7g050120 Pisum sativum HOM05D010746 ORTHO05D009732 5.6e-07 57.4 81 48.1
Eucgr.I00294 Eucalyptus grandis HOM05D008370 ORTHO05D009732 7.3e-07 57.0 75 48.0
FvH4_1g23211 Fragaria vesca HOM05D024037 ORTHO05D009732 7.3e-07 57.0 80 40.0
TPR.G2215 Trifolium pratense HOM05D010746 ORTHO05D009732 7.3e-07 57.0 76 48.7
FAN26G0048 Fragaria x ananassa HOM05D024037 ORTHO05D009732 9.6e-07 56.6 76 40.8
Manes.12G145500 Manihot esculenta HOM05D008370 ORTHO05D009732 9.6e-07 56.6 81 39.5
Psat7g050080 Pisum sativum HOM05D008370 ORTHO05D009732 9.6e-07 56.6 78 42.3
arahy.Tifrunner.gnm1.ann1.3XNV5U Arachis hypogaea HOM05D008370 ORTHO05D009732 1.2e-06 56.2 81 43.2
arahy.Tifrunner.gnm1.ann1.Q4N452 Arachis hypogaea HOM05D010746 ORTHO05D009732 1.2e-06 56.2 86 44.2
Phvul.009G138100 Phaseolus vulgaris HOM05D010746 ORTHO05D009732 1.2e-06 56.2 86 46.5
Glyma.04G217600 Glycine max HOM05D010746 ORTHO05D009732 1.6e-06 55.8 86 43.0
MD15G1335300 Malus domestica HOM05D015647 ORTHO05D009732 1.6e-06 55.8 92 40.2
arahy.Tifrunner.gnm1.ann1.Z046N5 Arachis hypogaea HOM05D010746 ORTHO05D009732 2.1e-06 55.5 86 43.0
FAN19G1178 Fragaria x ananassa HOM05D024037 ORTHO05D009732 2.1e-06 55.5 80 38.8
Lj1g0003131 Lotus japonicus HOM05D010746 ORTHO05D009732 2.1e-06 55.5 88 40.9
Lj4g0014601 Lotus japonicus HOM05D010746 ORTHO05D009732 2.1e-06 55.5 85 45.9
Glyma.05G186400 Glycine max HOM05D010746 ORTHO05D009732 2.8e-06 55.1 81 45.7
Actinidia01380 Actinidia chinensis HOM05D008370 ORTHO05D009732 3.6e-06 54.7 80 41.2
Duzib147G0345 Durio zibethinus HOM05D008370 ORTHO05D009732 3.6e-06 54.7 80 46.2
Gohir.D01G030000 Gossypium hirsutum HOM05D008370 ORTHO05D009732 4.7e-06 54.3 78 46.2
Lalb_Chr12g0203401 Lupinus albus HOM05D010746 ORTHO05D009732 4.7e-06 54.3 85 44.7
COL.COLO4_22370 Corchorus olitorius HOM05D008370 ORTHO05D009732 6.2e-06 53.9 82 45.1
Gohir.A02G136703 Gossypium hirsutum HOM05D008370 ORTHO05D009732 6.2e-06 53.9 81 45.7
Medtr8g092340 Medicago truncatula HOM05D010746 ORTHO05D009732 6.2e-06 53.9 82 42.7
SalBow5G4820 Salvia bowleyana HOM05D008370 ORTHO05D009732 6.2e-06 53.9 76 43.4
TPR.G2226 Trifolium pratense HOM05D008370 ORTHO05D009732 6.2e-06 53.9 80 46.2
ClCG02G000910 Citrullus lanatus HOM05D029062 ORTHO05D034721 8.1e-06 53.5 82 40.2
FAN23G2492 Fragaria x ananassa HOM05D024037 ORTHO05D009732 8.1e-06 53.5 80 38.8
Sed0018859 Sechium edule HOM05D029062 ORTHO05D009732 8.1e-06 53.5 83 38.6


User provided reference genes

Program Settings