Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 6315.3 3190 100.0
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 5077.3 3255 80.4
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 4513.0 3243 72.5
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 4477.5 3269 71.2
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 4477.5 3279 71.5
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 4424.0 3254 71.0
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4408.2 3254 70.4
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 4387.4 3254 70.2
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4371.2 3254 69.9
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4364.7 3254 69.9
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 4359.7 3255 69.8
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 4355.1 3260 69.3
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 4350.8 3253 70.3
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 4311.5 3284 69.1
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4265.7 3256 69.0
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4264.5 3256 68.0
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4263.8 3262 68.7
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 4258.0 3266 67.9
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4256.4 3258 68.1
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 4245.7 3288 68.4
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 4217.9 3309 67.7
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 4190.2 3246 67.8
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 4165.9 3250 67.6
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 4107.4 3247 66.8
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 4094.3 3269 66.0
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 4063.5 3252 66.0
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 4060.4 3258 65.9
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 4052.7 3220 66.7
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 4044.2 3267 65.6
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 4041.9 3267 65.6
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 4019.5 3256 65.7
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3993.0 3234 65.0
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3972.2 3372 63.8
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3958.7 3265 64.7
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3956.0 3255 64.2
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3949.4 3257 64.3
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3942.5 3261 64.1
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3898.2 3267 63.4
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3895.1 3270 63.8
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3894.4 3284 63.5
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3884.7 3258 63.6
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3869.3 2888 70.0
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3868.5 3272 64.3
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3695.2 3311 60.5
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3690.2 3268 60.8
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3666.7 3232 61.5
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3642.0 3283 59.8
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3624.3 3282 59.8
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3623.9 3223 60.1
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3622.4 3211 60.2
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3618.6 3224 60.4
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3612.0 3219 59.9
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 3601.6 3010 63.3
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3599.3 3222 59.5
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3589.7 3217 59.5
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3588.9 3227 59.4
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3588.5 3227 59.3
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3566.5 3285 59.1
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3550.4 3224 59.0
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3545.4 3256 59.4
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3518.8 3223 58.8
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3512.6 3238 59.5
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3510.7 3217 59.6
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3487.6 3278 58.7
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3475.3 3141 59.5
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3472.2 3251 58.8
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3431.7 3269 57.6
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3387.8 3223 58.5
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3356.2 3289 55.9
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 3356.2 3246 57.8
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3350.1 3280 55.9
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 3341.2 2019 84.8
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3231.0 2691 63.8
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 3210.6 3065 57.8
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 3176.3 2436 68.1
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 3004.9 3005 56.1
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2859.7 3130 52.4
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2719.1 3262 49.2
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2599.3 2463 56.9
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2490.7 1600 80.8
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2320.8 2568 52.3
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2295.8 1693 70.4
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2236.8 1989 60.4
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2179.1 3185 42.6
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 2162.1 1799 65.6
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2158.6 2417 50.5
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2115.5 2439 49.4
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2115.5 1506 73.1
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2070.0 1466 73.3
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 2065.0 2823 44.7
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 2053.1 1446 74.8
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1976.8 3314 39.1
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1965.3 3312 39.1
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1891.3 1003 96.4
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1837.0 969 96.4
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1827.8 3045 39.1
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1724.9 1498 63.9
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1555.8 1306 62.3
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1520.8 2152 43.6
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1502.6 1735 48.9
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1366.3 810 85.9
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1342.8 1541 48.9
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1278.5 1023 66.5
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1265.0 1554 48.1
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1241.5 1483 47.8
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1221.1 843 74.1
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1157.1 835 72.1
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1127.1 1136 57.5
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1083.6 951 61.2
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 0.0e+00 1080.1 890 62.4
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 5.0e-306 1056.2 852 64.6
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 2.6e-302 1043.9 3364 28.3
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.2e-298 1030.8 752 69.3
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 7.2e-273 946.0 1289 44.9
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 2.1e-224 785.0 465 88.2
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 4.9e-213 747.3 820 49.5
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 2.9e-205 721.5 412 89.8
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.6e-203 715.7 821 50.2
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.3e-202 711.8 441 81.6
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 1.3e-192 679.5 926 45.7
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 8.8e-170 603.6 802 45.9
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 6.1e-147 527.7 451 60.8
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 8.0e-147 527.3 656 46.5
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.7e-136 493.0 816 38.5
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 1.3e-133 483.4 799 37.7
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.1e-131 476.1 327 72.8
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 6.4e-128 464.5 865 35.6
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 9.6e-124 450.7 572 48.8
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.1e-122 447.2 250 88.4
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.4e-122 446.8 270 82.2
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.7e-120 439.9 578 47.4
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 9.0e-114 417.5 301 70.4
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 3.2e-111 409.1 630 40.5
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 7.3e-108 397.9 417 53.5
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 1.8e-106 393.3 342 61.7
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-97 364.0 460 44.3
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-96 360.5 245 70.6
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.3e-96 360.5 765 34.9
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 4.2e-95 355.5 217 84.3
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-91 344.0 244 68.4
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-88 334.0 356 52.2
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 5.0e-88 332.0 318 55.3
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 1.5e-84 320.5 814 30.6
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 8.2e-75 288.1 298 54.7
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 2.4e-74 286.6 326 49.7
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.9e-72 279.6 954 27.9
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 4.7e-70 272.3 330 48.2
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 2.2e-64 253.4 155 80.0
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 7.2e-63 248.4 714 28.3
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.6e-54 220.7 403 37.2
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.6e-54 219.5 707 28.7
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 4.0e-45 189.5 218 50.5
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 4.4e-36 159.5 118 69.5
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 1.4e-29 137.9 82 81.7
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.3e-29 137.1 111 55.9
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 4.4e-28 132.9 92 72.8
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 1.3e-27 131.3 118 61.0
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 8.3e-27 128.6 118 60.2
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 1.4e-26 127.9 120 60.0
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.2e-25 124.8 132 53.8
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 2.0e-25 124.0 70 87.1
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 3.0e-24 120.2 109 56.9
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.6e-22 114.4 86 66.3
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 7.5e-20 105.5 93 49.5
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 1.2e-12 81.6 60 61.7
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.0e-12 80.9 148 35.8
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-11 78.2 50 80.0
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 2.1e-09 70.9 45 77.8
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 4.6e-09 69.7 52 65.4
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.0e-08 68.6 57 57.9
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 5.6e-07 62.8 94 43.6
Lsat_1_v5_gn_6_660 Lactuca sativa HOM05D003133 ORTHO05D003642 5.6e-07 62.8 67 46.3
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 8.1e-06 58.9 94 44.7


User provided reference genes

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