Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 0.0e+00 1087.0 531 100.0
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 1.2e-278 962.6 531 88.3
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 3.2e-266 921.4 527 85.6
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 2.9e-259 898.3 570 80.9
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 4.2e-242 841.3 527 76.9
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 9.0e-237 823.5 531 75.3
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 5.7e-231 804.3 526 74.1
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 7.4e-231 803.9 528 72.9
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 4.1e-229 798.1 525 71.8
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 9.0e-229 797.0 482 78.8
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 2.0e-228 795.8 525 73.1
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 4.5e-228 794.7 525 73.5
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 7.7e-228 793.9 525 71.4
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 2.2e-227 792.3 525 73.1
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 5.5e-226 787.7 529 71.5
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 5.5e-226 787.7 524 72.9
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 1.8e-224 782.7 524 71.6
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 2.5e-223 778.9 524 71.4
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 2.0e-220 769.2 479 76.2
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 3.4e-220 768.5 523 71.5
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 3.8e-219 765.0 523 69.8
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 6.5e-219 764.2 527 69.4
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 1.1e-218 763.5 529 69.0
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 1.1e-218 763.5 524 70.2
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 2.5e-218 762.3 524 68.5
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 3.2e-218 761.9 523 68.6
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 3.2e-218 761.9 523 70.9
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 4.2e-218 761.5 524 70.2
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 7.2e-218 760.8 527 68.3
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 9.4e-218 760.4 531 70.6
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 9.4e-218 760.4 523 70.6
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 1.6e-217 759.6 523 68.8
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 2.7e-217 758.8 523 68.8
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 6.1e-217 757.7 523 69.0
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 1.0e-216 756.9 528 68.0
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 3.9e-216 755.0 523 69.4
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 8.8e-216 753.8 528 68.9
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 8.8e-216 753.8 528 68.8
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 1.5e-215 753.1 548 66.8
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 2.6e-215 752.3 523 68.1
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 5.7e-215 751.1 534 67.6
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 9.7e-215 750.4 525 69.5
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 2.8e-214 748.8 524 68.9
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 2.8e-214 748.8 528 68.6
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 3.7e-214 748.4 533 69.2
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.8e-214 748.0 523 69.8
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 4.8e-214 748.0 527 68.1
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 8.2e-214 747.3 528 67.6
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 3.1e-213 745.3 523 69.6
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 3.1e-213 745.3 528 68.0
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 2.6e-212 742.3 555 64.7
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 1.9e-210 736.1 534 66.7
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 2.5e-210 735.7 551 65.5
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 4.2e-210 734.9 557 65.2
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 5.5e-210 734.6 560 64.5
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 1.6e-209 733.0 529 67.1
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 8.0e-209 730.7 526 66.9
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 2.3e-208 729.2 524 66.4
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 1.5e-207 726.5 613 60.8
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 2.2e-206 722.6 479 71.2
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 2.2e-206 722.6 508 66.5
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 2.4e-205 719.2 528 66.3
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 7.7e-204 714.1 513 67.8
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 3.8e-203 711.8 531 65.2
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 2.5e-202 709.1 528 65.9
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 1.6e-201 706.4 449 75.9
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 6.1e-201 704.5 526 65.2
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.8e-200 703.0 472 71.4
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 2.8e-198 695.7 519 62.8
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 2.4e-197 692.6 529 64.3
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 3.1e-197 692.2 539 63.5
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.7e-196 689.1 486 68.7
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 5.0e-195 684.9 523 65.2
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 9.4e-194 680.6 527 62.6
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.5e-191 673.3 528 62.7
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 2.0e-191 672.9 470 67.4
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 9.8e-191 670.6 525 61.9
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 1.4e-189 666.8 436 73.4
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 5.4e-189 664.8 528 61.4
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 1.6e-188 663.3 417 73.9
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 1.6e-188 663.3 525 62.5
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 2.0e-188 662.9 526 62.5
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 3.5e-188 662.1 506 62.5
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 5.9e-188 661.4 527 61.1
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 7.7e-188 661.0 506 62.6
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 3.8e-187 658.7 528 61.4
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 2.5e-186 656.0 524 60.5
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 3.3e-186 655.6 526 62.0
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 9.5e-186 654.1 528 60.4
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 1.6e-185 653.3 453 69.8
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 4.7e-185 651.7 526 61.0
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 3.0e-184 649.0 527 60.9
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 3.0e-184 649.0 526 61.2
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 6.8e-184 647.9 479 67.0
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 5.7e-183 644.8 524 60.3
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 2.3e-179 632.9 500 61.6
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 4.0e-176 622.1 533 60.8
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 1.3e-174 617.1 533 60.0
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.3e-171 606.3 590 54.4
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 3.3e-170 602.4 399 72.4
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 4.7e-169 598.6 344 86.9
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 1.3e-166 590.5 520 57.9
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.3e-163 580.5 588 54.6
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 1.1e-162 577.4 416 65.9
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 6.6e-155 551.6 417 67.4
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 1.2e-153 547.4 424 63.0
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 6.8e-152 541.6 416 65.6
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 4.9e-150 535.4 527 51.6
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 6.9e-144 515.0 383 65.3
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 4.8e-137 492.3 489 53.2
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 9.0e-136 488.0 310 75.5
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 3.4e-135 486.1 355 65.9
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 2.7e-124 449.9 300 72.7
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 4.6e-124 449.1 526 47.9
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 7.9e-108 395.2 263 68.4
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 5.3e-104 382.5 253 70.4
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 2.2e-97 360.5 261 67.4
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 6.5e-94 349.0 253 63.2
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 4.2e-93 346.3 253 62.8
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 4.8e-89 332.8 254 60.6
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 3.8e-86 323.2 259 58.3
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 2.5e-85 320.5 256 60.5
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 3.0e-83 313.5 361 44.0
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 1.2e-82 311.6 242 65.3
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 2.0e-82 310.8 254 59.4
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 3.4e-82 310.1 251 58.2
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 5.9e-79 299.3 299 50.5
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 1.0e-78 298.5 254 55.1
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.7e-78 297.7 174 78.2
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 8.5e-78 295.4 211 64.9
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 9.5e-77 292.0 226 61.9
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 4.7e-76 289.7 239 56.9
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 1.7e-70 271.2 220 57.7
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 2.8e-68 263.8 186 73.1
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 8.0e-68 262.3 251 51.0
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.0e-67 261.9 278 48.9
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 5.9e-63 246.1 143 81.1
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 6.6e-62 242.7 251 48.2
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 1.6e-60 238.0 206 58.7
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 2.6e-58 230.7 168 61.9
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 1.3e-57 228.4 259 45.2
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 3.3e-53 213.8 282 44.7
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 5.6e-53 213.0 171 63.2
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 8.1e-52 209.1 223 44.8
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 5.2e-51 206.5 230 47.0
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 5.8e-50 203.0 167 59.3
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 6.4e-49 199.5 177 53.1
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 7.3e-45 186.0 176 53.4
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 9.9e-42 175.6 110 70.9
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 1.0e-38 165.6 98 82.7
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 1.2e-36 158.7 93 80.6
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 1.4e-35 155.2 124 58.9
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 4.4e-34 150.2 100 68.0
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 6.4e-33 146.4 161 44.1
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 3.2e-32 144.1 93 77.4
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 6.0e-31 139.8 71 88.7
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 8.7e-30 136.0 121 56.2
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 3.3e-29 134.0 103 61.2
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 3.3e-29 134.0 226 38.9
GSVIVG01006301001 Vitis vinifera HOM05D000026 ORTHO05D000127 6.2e-28 129.8 88 70.5
CAN.G555.5 Capsicum annuum HOM05D000219 ORTHO05D000137 2.9e-25 120.9 95 66.3
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 7.9e-23 112.8 107 57.9
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 1.5e-21 108.6 80 63.8
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 5.6e-21 106.7 59 79.7
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 5.6e-21 106.7 95 56.8
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 1.1e-19 102.4 61 75.4
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 4.0e-19 100.5 65 69.2
PGSC0003DMG401004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 7.1e-16 89.7 58 74.1
Atru.chr10.1695 Acer truncatum HOM05D000219 ORTHO05D021059 1.3e-14 85.5 83 55.4
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 6.7e-14 83.2 94 43.6
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 3.3e-13 80.9 56 64.3
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 4.3e-13 80.5 50 74.0
Gohir.A03G040550 Gossypium hirsutum HOM05D000219 ORTHO05D021059 1.8e-11 75.1 68 58.8
A07p24800 Brassica napus HOM05D000219 ORTHO05D017689 6.9e-11 73.2 73 52.1
BraA03t15335Z Brassica rapa HOM05D000219 ORTHO05D017689 6.9e-11 73.2 73 52.1
A02p19800 Brassica napus HOM05D000219 ORTHO05D017689 9.0e-11 72.8 73 52.1
C09p23930 Brassica napus HOM05D000219 ORTHO05D017689 1.0e-09 69.3 73 50.7
PGSC0003DMG400020960 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.7e-09 68.6 43 69.8
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 3.8e-09 67.4 62 54.8
Lj8A365T12 Lonicera japonica HOM05D000219 ORTHO05D004649 4.9e-09 67.0 36 86.1
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 6.5e-09 66.6 66 51.5
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 6.5e-09 66.6 66 51.5
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 6.5e-09 66.6 47 70.2
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 6.5e-09 66.6 66 51.5
BolC3t16144H Brassica oleracea HOM05D012973 ORTHO05D016770 8.4e-09 66.2 60 55.0
COL.COLO4_25028 Corchorus olitorius HOM05D000219 ORTHO05D004649 2.5e-08 64.7 43 72.1
SHI31712 Sapria himalayana HOM05D000219 ORTHO05D366583 2.7e-07 61.2 44 61.4


User provided reference genes

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