Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.5e-125 453.0 241 100.0
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 7.5e-122 440.7 241 97.1
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 9.2e-112 407.1 240 89.6
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.0e-111 406.0 243 88.5
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 7.3e-109 397.5 241 88.4
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 2.3e-107 392.5 241 85.5
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 3.5e-103 378.6 241 81.3
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 5.9e-103 377.9 241 83.4
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 7.8e-103 377.5 241 82.2
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 1.0e-102 377.1 241 83.4
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 1.3e-102 376.7 241 81.7
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 3.9e-102 375.2 241 82.2
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 8.6e-102 374.0 241 80.5
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 1.1e-101 373.6 242 82.2
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 1.1e-101 373.6 241 82.2
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 1.5e-101 373.2 241 81.7
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.9e-101 372.9 241 82.6
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.5e-101 372.5 241 80.1
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 7.3e-101 370.9 241 80.1
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 1.2e-100 370.2 241 80.9
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.2e-100 370.2 241 82.2
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.2e-100 370.2 241 80.5
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.6e-100 369.8 241 80.1
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 4.7e-100 368.2 241 80.1
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 6.2e-100 367.9 242 80.2
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 8.0e-100 367.5 241 80.5
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 4.0e-99 365.2 241 79.7
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.2e-99 364.8 241 80.1
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 5.2e-99 364.8 242 80.2
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 6.8e-99 364.4 242 81.0
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.2e-98 363.6 242 80.2
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 2.0e-98 362.8 241 79.7
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.6e-98 362.5 241 79.7
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.2e-97 359.4 244 79.1
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 6.4e-97 357.8 242 78.5
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 6.4e-97 357.8 241 79.3
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 8.3e-97 357.5 226 82.3
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 8.3e-97 357.5 241 77.6
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 4.1e-96 355.1 244 78.3
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.1e-96 355.1 242 78.5
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 5.4e-96 354.8 242 78.9
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 9.2e-96 354.0 242 77.3
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 3.5e-95 352.1 242 77.7
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 6.0e-95 351.3 241 77.6
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 6.0e-95 351.3 282 69.1
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.7e-94 349.7 241 74.7
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 3.0e-94 349.0 244 76.6
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 5.0e-94 348.2 237 78.5
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 1.9e-93 346.3 242 75.2
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 2.5e-93 345.9 242 75.2
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 2.5e-93 345.9 220 83.2
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 5.6e-93 344.7 245 77.1
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 7.3e-93 344.4 242 76.4
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 9.5e-93 344.0 244 76.2
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 1.2e-92 343.6 241 75.5
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.6e-92 343.2 242 75.6
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 2.1e-92 342.8 242 74.4
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 4.7e-92 341.7 243 75.3
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 1.1e-91 340.5 242 73.6
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.4e-91 340.1 242 74.8
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 1.5e-90 336.7 239 76.2
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 2.6e-90 335.9 241 72.2
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.6e-90 335.9 241 73.0
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 3.4e-90 335.5 239 76.6
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 4.4e-90 335.1 241 72.2
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 5.8e-90 334.7 241 71.8
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 7.5e-90 334.3 241 71.4
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 7.5e-90 334.3 238 75.2
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 9.8e-90 334.0 242 74.8
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 2.9e-89 332.4 241 71.8
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 2.9e-89 332.4 241 71.8
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 4.9e-89 331.6 241 71.0
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.9e-89 331.6 241 73.4
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 8.3e-89 330.9 241 71.8
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 8.3e-89 330.9 241 71.4
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 8.3e-89 330.9 270 66.7
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 4.1e-88 328.6 241 71.8
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 7.1e-88 327.8 222 79.3
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 7.1e-88 327.8 245 73.9
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 9.2e-88 327.4 241 71.0
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 9.2e-88 327.4 241 70.5
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 9.2e-88 327.4 221 77.8
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 1.2e-87 327.0 242 72.7
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 2.1e-87 326.2 242 71.1
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.1e-87 326.2 226 76.5
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.1e-87 326.2 241 70.5
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.7e-87 325.9 241 70.5
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 4.6e-87 325.1 243 72.0
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 4.6e-87 325.1 243 73.3
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 7.8e-87 324.3 246 69.1
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 7.8e-87 324.3 243 72.8
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.7e-86 323.2 242 70.7
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.7e-86 323.2 242 70.7
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.7e-86 323.2 241 68.9
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.3e-86 322.8 243 71.2
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 8.6e-86 320.9 196 84.7
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 1.5e-85 320.1 243 70.0
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.9e-85 319.7 223 75.3
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.5e-85 319.3 197 86.3
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 3.3e-85 318.9 281 65.1
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 4.3e-85 318.5 244 70.1
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 9.5e-85 317.4 278 65.1
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 1.2e-84 317.0 243 69.1
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 1.6e-84 316.6 244 70.1
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 1.6e-84 316.6 196 85.2
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 1.6e-84 316.6 243 69.1
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 2.1e-84 316.2 196 83.7
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 2.8e-84 315.8 226 73.0
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 3.6e-84 315.5 290 61.0
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 6.2e-84 314.7 258 67.4
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.8e-83 313.2 244 68.9
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 3.1e-83 312.4 231 71.9
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 4.0e-83 312.0 196 82.7
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 2.6e-82 309.3 196 83.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 2.6e-82 309.3 198 79.8
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 3.4e-82 308.9 258 66.7
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 2.2e-81 306.2 287 63.1
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 1.1e-80 303.9 246 69.1
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.9e-80 303.1 196 80.6
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.4e-80 302.8 199 80.9
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.1e-80 302.0 199 80.4
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.4e-80 301.6 199 80.9
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 9.2e-80 300.8 244 65.2
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 1.2e-79 300.4 244 64.8
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.5e-79 298.9 199 80.4
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 6.6e-78 294.7 216 72.7
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 2.2e-73 279.6 196 73.0
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.1e-71 273.1 179 78.2
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.7e-70 270.0 220 66.8
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 5.6e-69 265.0 175 80.0
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 3.1e-67 259.2 242 60.3
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 3.4e-66 255.8 188 69.7
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 3.2e-64 249.2 135 95.6
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 4.8e-60 235.3 196 68.4
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 2.4e-59 233.0 223 59.6
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 2.4e-56 223.0 155 75.5
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 5.5e-48 195.3 155 65.2
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 3.4e-42 176.0 130 69.2
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 9.3e-40 167.9 149 63.1
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.6e-39 166.0 169 56.2
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 1.9e-37 160.2 112 75.9
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 1.6e-31 140.6 198 40.9
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.1e-31 140.2 232 43.1
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.0e-30 137.9 223 43.0
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 9.7e-29 131.3 203 36.0
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 1.5e-26 124.0 209 34.9
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.0e-25 121.3 236 40.3
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 1.1e-24 117.9 99 61.6
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 1.8e-22 110.5 178 35.4
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 8.8e-22 108.2 192 33.9
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 2.0e-21 107.1 77 68.8
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.2e-17 93.6 177 41.2
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 8.5e-17 91.7 63 77.8
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 1.6e-15 87.4 85 58.8
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 3.1e-11 73.2 64 67.2
MCO03G035 Micromonas commoda HOM05D002293 ORTHO05D005475 8.5e-09 65.1 188 27.7
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.4e-06 57.8 41 78.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 2.3e-06 57.0 40 80.0


User provided reference genes

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