Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002696 Carpinus fangiana HOM05D017882 ORTHO05D020350 4.4e-92 341.3 171 100.0
Cfa015099 Carpinus fangiana HOM05D000188 ORTHO05D000362 2.9e-88 328.6 169 97.0
Cfa007710 Carpinus fangiana HOM05D001522 ORTHO05D001547 5.1e-40 168.3 112 80.4
Cfa004391 Carpinus fangiana HOM05D017882 ORTHO05D020350 1.9e-39 166.4 83 95.2
Haze_24387 Corylus avellana HOM05D000088 ORTHO05D006380 2.0e-36 156.4 187 52.9
Cfa011746 Carpinus fangiana HOM05D000088 ORTHO05D006380 2.6e-36 156.0 187 52.9
Cfa019055 Carpinus fangiana HOM05D017882 ORTHO05D020350 2.2e-35 152.9 91 84.6
CiPaw.13G072600 Carya illinoinensis HOM05D000088 ORTHO05D006380 4.2e-34 148.7 188 51.1
QL01p039724 Quercus lobata HOM05D000088 ORTHO05D006380 7.8e-33 144.4 189 48.1
Thecc.01G003500 Theobroma cacao HOM05D000088 ORTHO05D006380 3.3e-31 139.0 181 48.6
Manes.18G144500 Manihot esculenta HOM05D000088 ORTHO05D006380 5.6e-31 138.3 187 46.0
RcHm_v2.0_Chr5g0070921 Rosa chinensis HOM05D000088 ORTHO05D006380 2.4e-29 132.9 187 44.4
FAN16G3274 Fragaria x ananassa HOM05D000088 ORTHO05D006380 5.3e-29 131.7 186 44.6
MD11G1065600 Malus domestica HOM05D000088 ORTHO05D006380 5.3e-29 131.7 208 40.4
TWI36G1610 Tripterygium wilfordii HOM05D000088 ORTHO05D006380 5.3e-29 131.7 187 43.3
Cpa.g.sc2.387 Carica papaya HOM05D000088 ORTHO05D006380 9.0e-29 131.0 187 45.5
AUR62036250 Chenopodium quinoa HOM05D000088 ORTHO05D006380 2.0e-28 129.8 187 44.9
FAN25G0512 Fragaria x ananassa HOM05D000088 ORTHO05D006380 2.0e-28 129.8 186 44.1
Ciclev10028051m.g Citrus clementina HOM05D000088 ORTHO05D006380 2.6e-28 129.4 188 44.7
FAN11G0766 Fragaria x ananassa HOM05D000088 ORTHO05D006380 5.8e-28 128.3 186 43.5
FAN21G3629 Fragaria x ananassa HOM05D000088 ORTHO05D006380 5.8e-28 128.3 186 43.5
Gohir.A07G171900 Gossypium hirsutum HOM05D000088 ORTHO05D006380 7.6e-28 127.9 187 43.3
vmacro02936 Vaccinium macrocarpon HOM05D000088 ORTHO05D006380 7.6e-28 127.9 187 42.8
Atru.chr3.4153 Acer truncatum HOM05D000088 ORTHO05D006380 9.9e-28 127.5 189 42.9
Sabra09G0057800 Salix brachista HOM05D000088 ORTHO05D006380 1.3e-27 127.1 187 43.3
Gorai.001G199800 Gossypium raimondii HOM05D000088 ORTHO05D006380 1.7e-27 126.7 188 42.6
Hund05038 Selenicereus undatus HOM05D000088 ORTHO05D006380 1.7e-27 126.7 187 42.8
Sc12g0000250 Simmondsia chinensis HOM05D000088 ORTHO05D006380 1.7e-27 126.7 187 42.2
Prupe.6G051800 Prunus persica HOM05D000088 ORTHO05D006380 2.2e-27 126.3 187 42.8
EL10Ac7g15891 Beta vulgaris HOM05D000088 ORTHO05D006380 2.9e-27 125.9 188 44.7
ECA236G4487 Erigeron canadensis HOM05D000088 ORTHO05D006380 2.9e-27 125.9 188 44.1
Gohir.D07G178600 Gossypium hirsutum HOM05D000088 ORTHO05D006380 2.9e-27 125.9 187 42.8
Rhsim13G0066000 Rhododendron simsii HOM05D000088 ORTHO05D006380 6.4e-27 124.8 187 41.7
FvH4_3g39380 Fragaria vesca HOM05D000088 ORTHO05D006380 8.4e-27 124.4 186 42.5
GSVIVG01024679001 Vitis vinifera HOM05D000088 ORTHO05D006380 1.1e-26 124.0 187 43.3
Duzib147G0696 Durio zibethinus HOM05D000088 ORTHO05D006380 1.4e-26 123.6 187 43.3
Lj1A128T44 Lonicera japonica HOM05D000088 ORTHO05D006380 2.4e-26 122.9 185 42.2
VMungo0647G1890 Vigna mungo HOM05D000088 ORTHO05D006380 3.2e-26 122.5 183 43.2
Ah.08g215290 Amaranthus hybridus HOM05D000088 ORTHO05D006380 4.2e-26 122.1 187 43.9
MSTRG.17885 Avicennia marina HOM05D000088 ORTHO05D006380 4.2e-26 122.1 183 42.6
Phvul.008G258400 Phaseolus vulgaris HOM05D000088 ORTHO05D006380 7.1e-26 121.3 183 41.5
Sabra16G0174400 Salix brachista HOM05D000088 ORTHO05D006380 7.1e-26 121.3 185 43.2
CSS0004336 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D006380 9.3e-26 120.9 187 41.2
Potri.001G280700 Populus trichocarpa HOM05D000088 ORTHO05D006380 1.2e-25 120.6 185 42.7
Lsat_1_v5_gn_8_111061 Lactuca sativa HOM05D000088 ORTHO05D006380 1.6e-25 120.2 189 42.3
Manes.02G213600 Manihot esculenta HOM05D000088 ORTHO05D006380 1.6e-25 120.2 187 39.0
CSS0043996 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D006380 2.1e-25 119.8 187 40.6
Migut.N00772 Erythranthe guttata HOM05D000088 ORTHO05D006380 2.7e-25 119.4 181 42.5
Glyma.02G229900 Glycine max HOM05D000088 ORTHO05D006380 2.7e-25 119.4 183 42.1
Nitab4.5_0001115g0070 Nicotiana tabacum HOM05D000088 ORTHO05D006380 2.7e-25 119.4 186 39.2
ClCG02G019340 Citrullus lanatus HOM05D000088 ORTHO05D006380 3.5e-25 119.0 184 42.9
Actinidia32622 Actinidia chinensis HOM05D000088 ORTHO05D006380 4.6e-25 118.6 187 42.8
Potri.009G075900 Populus trichocarpa HOM05D000088 ORTHO05D006380 4.6e-25 118.6 187 41.7
Hma1.2p1_0841F.1_g226840 Hydrangea macrophylla HOM05D000088 ORTHO05D006380 6.0e-25 118.2 186 41.4
Oeu049284.1 Olea europaea HOM05D000088 ORTHO05D006380 6.0e-25 118.2 184 41.8
TAR633G2705 Trochodendron aralioides HOM05D000088 ORTHO05D006380 1.3e-24 117.1 187 39.6
Medtr3g465590 Medicago truncatula HOM05D000088 ORTHO05D006380 1.8e-24 116.7 184 41.3
Sed0001583 Sechium edule HOM05D000088 ORTHO05D006380 1.8e-24 116.7 185 42.7
MELO3C026840.2 Cucumis melo HOM05D000088 ORTHO05D006380 2.3e-24 116.3 179 41.9
CsaV3_6G015960 Cucumis sativus L. HOM05D000088 ORTHO05D006380 2.3e-24 116.3 179 41.9
Sopen06g033570 Solanum pennellii HOM05D000088 ORTHO05D006380 2.3e-24 116.3 187 42.2
TAR636G0713 Trochodendron aralioides HOM05D000088 ORTHO05D006380 2.3e-24 116.3 187 38.5
HanXRQChr10g0312151 Helianthus annuus HOM05D000088 ORTHO05D006380 3.9e-24 115.5 187 41.7
Solyc06g082190.3 Solanum lycopersicum HOM05D000088 ORTHO05D006380 3.9e-24 115.5 187 42.2
Lj6g0013953 Lotus japonicus HOM05D000088 ORTHO05D006380 5.1e-24 115.2 187 39.6
PGSC0003DMG400030450 Solanum tuberosum HOM05D000088 ORTHO05D006380 5.1e-24 115.2 187 41.7
CAN.G1095.16 Capsicum annuum HOM05D000088 ORTHO05D006380 6.7e-24 114.8 187 41.7
CDE12G0743 Ceratophyllum demersum HOM05D000088 ORTHO05D006380 6.7e-24 114.8 143 47.6
MD15G1018800 Malus domestica HOM05D000088 ORTHO05D006380 6.7e-24 114.8 188 39.4
PGR119G0811 Punica granatum HOM05D000088 ORTHO05D006380 6.7e-24 114.8 191 38.7
TPR.G32888 Trifolium pratense HOM05D000088 ORTHO05D006380 6.7e-24 114.8 183 41.5
Glyma.14G196600 Glycine max HOM05D000088 ORTHO05D006380 8.7e-24 114.4 183 39.9
THA.LOC104810695 Tarenaya hassleriana HOM05D000088 ORTHO05D006380 8.7e-24 114.4 187 39.0
Lalb_Chr18g0051271 Lupinus albus HOM05D000088 ORTHO05D006380 1.1e-23 114.0 190 38.4
Nitab4.5_0002043g0020 Nicotiana tabacum HOM05D000088 ORTHO05D006380 2.5e-23 112.8 187 40.6
arahy.Tifrunner.gnm1.ann1.HC1U3C Arachis hypogaea HOM05D000088 ORTHO05D006380 4.3e-23 112.1 189 41.3
Sp6g35760 Schrenkiella parvula HOM05D000088 ORTHO05D006380 4.3e-23 112.1 188 36.7
Lalb_Chr04g0252091 Lupinus albus HOM05D000088 ORTHO05D006380 5.6e-23 111.7 188 37.2
Psat5g155640 Pisum sativum HOM05D000088 ORTHO05D006380 7.4e-23 111.3 184 40.2
DCAR_007353 Daucus carota HOM05D001929 ORTHO05D002426 1.3e-22 110.5 184 39.1
SGA_v2.0_scaffold80G25722 Striga asiatica HOM05D000088 ORTHO05D006380 1.3e-22 110.5 181 38.7
arahy.Tifrunner.gnm1.ann1.K6VENA Arachis hypogaea HOM05D000088 ORTHO05D006380 2.1e-22 109.8 193 40.9
Ca_14989_v3 Cicer arietinum L. HOM05D000088 ORTHO05D006380 2.1e-22 109.8 184 40.2
Ca_30102_v3 Cicer arietinum L. HOM05D000088 ORTHO05D006380 2.1e-22 109.8 184 40.2
C09p69270 Brassica napus HOM05D000761 ORTHO05D006380 8.1e-22 107.8 183 36.1
BolC9t59671H Brassica oleracea HOM05D000761 ORTHO05D006380 8.1e-22 107.8 183 36.1
Aqoxy2G00821 Aquilegia oxysepala HOM05D000088 ORTHO05D006380 1.1e-21 107.5 206 36.4
Nitab4.5_0006308g0020 Nicotiana tabacum HOM05D000088 ORTHO05D006380 1.1e-21 107.5 187 39.6
A10p28920 Brassica napus HOM05D000761 ORTHO05D006380 1.4e-21 107.1 184 35.9
BraA10t44939Z Brassica rapa HOM05D000761 ORTHO05D006380 1.4e-21 107.1 184 35.9
Cc02_g20710 Coffea canephora HOM05D000088 ORTHO05D006380 1.4e-21 107.1 186 37.6
Lalb_Chr17g0345281 Lupinus albus HOM05D000088 ORTHO05D006380 1.4e-21 107.1 185 39.5
Carub.0006s0606 Capsella rubella HOM05D000088 ORTHO05D006380 3.1e-21 105.9 188 36.7
Glyma.18G058800 Glycine max HOM05D000088 ORTHO05D006380 3.1e-21 105.9 187 38.0
CARHR206000 Cardamine hirsuta HOM05D000088 ORTHO05D006380 5.3e-21 105.1 188 36.7
Peaxi162Scf00540g00014 Petunia axillaris HOM05D000088 ORTHO05D006380 5.3e-21 105.1 187 39.0
AL6G17330 Arabidopsis lyrata HOM05D000088 ORTHO05D006380 9.0e-21 104.4 189 35.4
Eucgr.J01907 Eucalyptus grandis HOM05D001929 ORTHO05D002426 9.0e-21 104.4 187 37.4
AT5G07140 Arabidopsis thaliana HOM05D000088 ORTHO05D006380 3.4e-20 102.4 207 33.3
PSO339G6467 Papaver somniferum HOM05D000088 ORTHO05D006380 3.4e-20 102.4 180 37.2
Phvul.006G072300 Phaseolus vulgaris HOM05D000088 ORTHO05D006380 5.8e-20 101.7 187 36.9
Aa31LG11G300 Aethionema arabicum HOM05D000761 ORTHO05D006380 1.3e-19 100.5 206 35.9
PSO801G0216 Papaver somniferum HOM05D000088 ORTHO05D006380 3.8e-19 99.0 180 36.1
Glyma.11G166000 Glycine max HOM05D000088 ORTHO05D006380 4.9e-19 98.6 187 35.3
Sp6g20210 Schrenkiella parvula HOM05D000088 ORTHO05D006380 6.5e-19 98.2 197 34.0
CDE06G1759 Ceratophyllum demersum HOM05D000088 ORTHO05D006380 1.1e-18 97.4 162 40.1
Psat2g055320 Pisum sativum HOM05D000088 ORTHO05D006380 1.4e-18 97.1 196 34.7
Ca_05636_v3 Cicer arietinum L. HOM05D000088 ORTHO05D006380 1.9e-18 96.7 191 35.1
A03p12190 Brassica napus HOM05D000088 ORTHO05D006380 2.5e-18 96.3 190 35.8
C03p14260 Brassica napus HOM05D000088 ORTHO05D006380 2.5e-18 96.3 190 35.8
BraA03t10530Z Brassica rapa HOM05D000088 ORTHO05D006380 2.5e-18 96.3 190 35.8
Thhalv10013017m.g Eutrema salsugineum HOM05D000088 ORTHO05D006380 2.5e-18 96.3 206 33.5
Medtr5g072500 Medicago truncatula HOM05D000088 ORTHO05D006380 2.5e-18 96.3 189 36.0
AL8G34760 Arabidopsis lyrata HOM05D000088 ORTHO05D006380 5.5e-18 95.1 206 34.5
CARHR272350 Cardamine hirsuta HOM05D000088 ORTHO05D006380 5.5e-18 95.1 187 35.3
Cfa006821 Carpinus fangiana HOM05D017882 ORTHO05D020350 5.5e-18 95.1 48 93.8
PSO017G7188 Papaver somniferum HOM05D000088 ORTHO05D006380 9.3e-18 94.4 191 37.2
AT5G58520 Arabidopsis thaliana HOM05D000088 ORTHO05D006380 1.2e-17 94.0 206 33.5
Carub.0008s1911 Capsella rubella HOM05D000088 ORTHO05D006380 1.2e-17 94.0 188 34.6
Cfa023324 Carpinus fangiana HOM05D017882 ORTHO05D020350 1.2e-17 94.0 48 93.8
PSO170G5275 Papaver somniferum HOM05D000088 ORTHO05D006380 1.2e-17 94.0 206 35.9
Cfa014271 Carpinus fangiana HOM05D017882 ORTHO05D020350 2.1e-17 93.2 48 93.8
TPR.G34746 Trifolium pratense HOM05D000088 ORTHO05D006380 2.1e-17 93.2 187 34.8
BcaB01g04518 Brassica carinata HOM05D000088 ORTHO05D006380 2.7e-17 92.8 189 35.4
BolC3t13873H Brassica oleracea HOM05D000088 ORTHO05D006380 2.7e-17 92.8 190 34.2
AUR62009696 Chenopodium quinoa HOM05D000088 ORTHO05D006380 3.3e-15 85.9 59 72.9
Cc01_g14660 Coffea canephora HOM05D000088 ORTHO05D006380 4.3e-15 85.5 187 32.1
COL.COLO4_22563 Corchorus olitorius HOM05D000088 ORTHO05D006380 1.3e-14 84.0 57 70.2
LjContig00141g0016544 Lotus japonicus HOM05D000088 ORTHO05D006380 2.1e-14 83.2 198 31.3
SEGI_07216 Sequoiadendron giganteum HOM05D000088 ORTHO05D006380 2.1e-14 83.2 188 33.0
SEGI_26789 Sequoiadendron giganteum HOM05D000088 ORTHO05D006380 2.8e-14 82.8 182 33.5
MD03G1062000 Malus domestica HOM05D000088 ORTHO05D006380 3.7e-14 82.4 64 67.2
HPP92_025108 Vanilla planifolia HOM05D000088 ORTHO05D006380 6.2e-14 81.6 194 33.0
Actinidia23214 Actinidia chinensis HOM05D000088 ORTHO05D006380 1.4e-13 80.5 59 67.8
Nn2g10968 Nelumbo nucifera HOM05D000088 ORTHO05D006380 1.5e-12 77.0 57 63.2
VMungo0540G0876 Vigna mungo HOM05D000088 ORTHO05D006380 5.8e-12 75.1 52 67.3
Dinv09654 Davidia involucrata HOM05D000088 ORTHO05D006380 1.3e-11 73.9 59 59.3
ATR0174G020 Amborella trichopoda HOM05D000088 ORTHO05D006380 1.9e-10 70.1 36 83.3
Cfa020392 Carpinus fangiana HOM05D017882 ORTHO05D020350 2.5e-10 69.7 54 70.4
Glyma.07G111700 Glycine max HOM05D000088 ORTHO05D006380 2.7e-09 66.2 55 56.4
SMO118G0147 Selaginella moellendorffii HOM05D000088 ORTHO05D006380 4.8e-06 55.5 96 35.4
Zm00001eb396880 Zea mays HOM05D000088 ORTHO05D006380 8.2e-06 54.7 192 28.1


User provided reference genes

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