Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 8.3e-213 743.4 372 100.0
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 4.0e-183 644.8 388 86.6
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 2.0e-126 456.4 374 63.6
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 5.0e-125 451.8 371 64.7
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 3.4e-121 439.1 372 65.3
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.0e-110 403.3 321 66.0
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.9e-87 327.0 379 47.5
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.7e-86 323.2 384 51.0
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 2.2e-80 303.5 384 48.2
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 9.2e-79 298.1 381 48.8
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.6e-78 297.4 376 50.5
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 4.6e-78 295.8 363 47.1
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 3.0e-77 293.1 376 50.5
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 6.6e-77 292.0 369 44.7
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 6.6e-77 292.0 379 47.0
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 4.3e-76 289.3 392 45.2
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 7.3e-76 288.5 383 47.3
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 9.0e-74 281.6 373 47.2
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 7.6e-73 278.5 386 46.6
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 3.8e-72 276.2 386 45.9
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 8.4e-72 275.0 388 46.9
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 9.3e-71 271.6 381 43.0
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.0e-69 268.1 390 43.3
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 7.3e-68 261.9 375 46.7
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 4.8e-67 259.2 376 46.5
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 8.1e-67 258.5 304 48.4
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.4e-65 253.1 374 43.0
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 6.4e-64 248.8 374 42.8
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.1e-63 248.1 372 44.1
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 3.2e-63 246.5 378 40.2
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.9e-62 241.9 375 44.8
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 7.9e-62 241.9 375 44.8
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.3e-61 240.4 380 43.2
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 2.5e-60 236.9 380 42.6
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.3e-60 236.1 380 42.1
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.6e-60 235.7 375 43.2
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.4e-60 235.3 375 44.0
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.6e-59 234.2 387 39.3
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.4e-58 230.3 172 66.3
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 9.9e-57 224.9 348 41.7
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 2.2e-56 223.8 388 41.5
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 3.2e-55 219.9 227 53.3
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 4.2e-55 219.5 385 36.9
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 2.7e-54 216.9 384 38.0
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.3e-52 209.9 346 41.3
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 9.6e-52 208.4 375 37.3
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.1e-51 207.2 368 39.4
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 2.8e-51 206.8 373 36.7
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 8.2e-51 205.3 375 37.3
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.1e-50 204.9 357 41.2
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.7e-48 197.6 374 38.0
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.4e-47 194.5 377 37.9
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 2.5e-47 193.7 335 40.9
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 4.2e-47 193.0 391 35.3
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.7e-46 190.3 370 37.8
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.5e-44 183.7 353 37.4
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 3.7e-43 179.9 360 37.2
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 4.8e-43 179.5 372 37.6
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.4e-42 177.2 285 38.2
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 9.0e-42 175.3 354 37.6
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 2.6e-41 173.7 389 32.4
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 3.4e-41 173.3 399 31.6
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.0e-40 171.8 344 38.1
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.0e-40 171.8 401 30.4
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.7e-40 171.0 166 54.2
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 8.5e-40 168.7 357 38.9
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.1e-39 168.3 375 36.0
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.5e-39 167.2 363 36.9
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 3.2e-39 166.8 367 35.4
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 7.2e-39 165.6 367 34.9
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 7.2e-39 165.6 367 34.9
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 7.2e-39 165.6 367 34.9
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 9.3e-39 165.2 397 31.7
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 9.3e-39 165.2 397 31.7
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.2e-38 164.9 369 34.1
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 1.2e-38 164.9 164 51.8
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 2.1e-38 164.1 381 34.4
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 7.9e-38 162.2 367 33.8
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-37 161.4 371 35.8
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 6.7e-37 159.1 377 31.0
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 8.7e-37 158.7 367 33.0
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 7.4e-36 155.6 356 35.1
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 7.4e-36 155.6 360 34.7
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.3e-35 154.8 150 51.3
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.7e-35 154.5 382 35.1
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.2e-35 154.1 309 35.0
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 4.8e-35 152.9 193 44.0
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 8.2e-35 152.1 386 31.9
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 8.2e-35 152.1 374 36.6
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 8.2e-35 152.1 150 51.3
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 5.3e-34 149.4 366 34.2
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.5e-33 147.9 159 47.2
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 2.6e-33 147.1 362 34.3
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 3.4e-33 146.7 386 30.3
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 5.9e-33 146.0 182 45.6
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.7e-32 144.4 364 32.7
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.7e-32 144.4 414 29.0
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 5.0e-32 142.9 361 30.5
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 5.0e-32 142.9 364 31.6
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 6.5e-32 142.5 223 40.4
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 6.5e-32 142.5 361 29.9
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 8.5e-32 142.1 153 50.3
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 8.5e-32 142.1 153 50.3
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.1e-31 141.7 354 31.9
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 2.5e-31 140.6 153 49.7
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 5.5e-31 139.4 375 29.9
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 9.4e-31 138.7 161 44.7
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 9.4e-31 138.7 151 45.7
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 4.7e-30 136.3 270 35.2
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 6.1e-30 136.0 125 56.0
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 6.1e-30 136.0 160 41.9
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 1.4e-29 134.8 362 32.3
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 2.3e-29 134.0 420 28.3
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 3.0e-29 133.7 120 56.7
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.9e-29 133.3 323 33.4
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.5e-28 131.3 361 31.9
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 5.7e-28 129.4 362 32.3
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 5.7e-28 129.4 362 32.3
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.7e-27 126.7 178 42.1
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.4e-26 124.0 293 35.5
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 6.9e-26 122.5 176 39.8
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 1.5e-25 121.3 350 31.7
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 2.2e-24 117.5 148 48.6
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 5.2e-21 106.3 101 54.5
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 6.7e-21 105.9 118 44.9
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 5.7e-20 102.8 164 37.8
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 4.8e-19 99.8 357 27.7
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 9.1e-18 95.5 367 29.2
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 2.6e-17 94.0 206 35.9
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 4.5e-17 93.2 148 36.5
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.2e-15 87.0 273 31.1
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 4.7e-14 83.2 117 37.6
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 8.0e-14 82.4 114 37.7
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 5.2e-13 79.7 87 51.7
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 2.0e-12 77.8 171 33.9
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 4.4e-12 76.6 137 32.1
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 6.3e-11 72.8 223 30.5
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 1.0e-08 65.5 104 35.6
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 5.0e-08 63.2 115 35.7
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 8.5e-08 62.4 151 30.5
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 7.2e-07 59.3 194 27.8
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.2e-06 58.5 155 25.8
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 2.1e-06 57.8 56 46.4


User provided reference genes

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