Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 7.1e-90 334.0 174 100.0
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 7.1e-90 334.0 174 100.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.6e-76 288.9 173 90.2
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 2.3e-64 249.2 171 78.4
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.5e-63 246.5 172 76.7
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 3.3e-63 245.4 178 74.2
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 4.3e-63 245.0 171 77.8
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 5.7e-63 244.6 172 76.7
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 3.7e-62 241.9 169 74.0
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 8.2e-62 240.7 189 74.1
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.1e-61 240.4 171 73.1
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 4.1e-61 238.4 167 76.6
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 4.1e-61 238.4 176 76.1
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.2e-60 236.9 169 75.7
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 4.5e-60 235.0 187 71.1
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 5.9e-60 234.6 168 73.2
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.0e-59 233.8 198 65.2
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 2.9e-59 232.3 169 75.7
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.9e-59 232.3 174 74.1
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 8.5e-59 230.7 174 70.1
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.1e-58 230.3 176 72.2
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.1e-58 230.3 183 68.3
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.4e-58 229.9 179 73.7
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.9e-58 229.6 172 70.9
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.9e-58 229.6 178 73.0
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.9e-58 229.6 174 73.6
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.9e-58 229.6 174 73.6
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 2.5e-58 229.2 178 70.8
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.2e-58 228.8 175 73.1
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.2e-58 228.8 179 72.1
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.2e-58 228.8 168 71.4
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 4.2e-58 228.4 190 68.9
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 4.2e-58 228.4 177 70.6
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 4.2e-58 228.4 170 71.2
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 5.5e-58 228.0 169 71.0
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 2.1e-57 226.1 182 71.4
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.1e-57 226.1 176 71.6
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.1e-57 226.1 178 70.2
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 2.7e-57 225.7 175 72.6
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 2.7e-57 225.7 186 67.7
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 2.7e-57 225.7 186 67.7
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 3.6e-57 225.3 170 71.8
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 4.7e-57 224.9 190 67.9
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 6.1e-57 224.6 176 69.9
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 7.9e-57 224.2 174 72.4
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 7.9e-57 224.2 176 69.9
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.0e-56 223.8 178 69.1
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.8e-56 223.0 174 70.1
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 2.3e-56 222.6 181 69.1
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 2.3e-56 222.6 185 68.1
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.3e-56 222.6 173 67.6
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 3.0e-56 222.2 181 64.1
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 5.1e-56 221.5 176 69.9
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 6.7e-56 221.1 131 84.7
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 1.5e-55 219.9 176 68.2
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.6e-55 219.2 203 64.5
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 4.4e-55 218.4 178 68.5
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 4.4e-55 218.4 171 70.2
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 5.7e-55 218.0 170 70.6
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 7.4e-55 217.6 177 70.1
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 7.4e-55 217.6 179 68.2
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.3e-54 216.9 171 68.4
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.2e-54 216.1 181 65.2
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.2e-54 216.1 202 64.4
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 4.8e-54 214.9 175 66.3
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 8.2e-54 214.2 193 61.7
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-53 213.8 170 68.8
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.8e-53 213.0 181 64.6
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.8e-53 213.0 174 70.1
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 4.1e-53 211.8 192 63.5
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 4.1e-53 211.8 179 67.0
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.3e-53 211.5 170 68.2
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 5.3e-53 211.5 174 67.2
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 9.1e-53 210.7 169 65.1
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.5e-52 209.9 174 67.8
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.5e-52 209.9 190 63.2
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 2.0e-52 209.5 189 64.0
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.6e-52 209.1 170 68.2
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 5.9e-52 208.0 177 67.2
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 5.9e-52 208.0 177 67.2
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 5.9e-52 208.0 177 67.2
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 5.9e-52 208.0 174 67.2
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.9e-51 205.7 133 79.7
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 3.8e-51 205.3 201 59.2
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.4e-50 203.4 178 66.3
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.4e-50 203.4 178 66.3
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.9e-50 203.0 175 65.1
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 3.2e-50 202.2 195 60.0
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 3.2e-50 202.2 174 66.7
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 5.5e-50 201.4 174 66.1
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 7.2e-50 201.1 152 73.0
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 9.4e-50 200.7 176 65.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 9.4e-50 200.7 175 65.7
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 1.6e-49 199.9 180 62.2
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 6.1e-49 198.0 168 66.7
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.4e-48 196.8 190 60.5
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.8e-48 196.4 176 65.3
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.1e-47 193.7 172 61.6
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.5e-47 193.4 175 64.0
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.5e-47 193.4 190 58.4
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 1.5e-47 193.4 175 64.0
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 4.4e-47 191.8 168 59.5
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 7.4e-47 191.0 184 60.3
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.3e-46 190.3 180 62.8
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.2e-46 189.5 174 63.2
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.2e-46 189.5 174 63.2
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.8e-46 189.1 173 64.2
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.1e-45 187.2 120 75.8
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 2.4e-45 186.0 176 60.8
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 3.1e-45 185.7 178 60.7
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 7.7e-44 181.0 148 67.6
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 2.2e-43 179.5 170 64.1
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 6.5e-43 177.9 174 59.8
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.9e-42 176.4 170 61.2
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.2e-39 167.2 132 63.6
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.3e-39 165.6 177 58.2
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 5.7e-39 164.9 92 88.0
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.7e-38 163.3 190 48.9
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 2.2e-38 162.9 138 68.8
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 5.3e-37 158.3 145 62.8
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 7.0e-37 157.9 190 48.4
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 2.5e-34 149.4 123 65.9
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 4.0e-32 142.1 117 63.2
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.8e-30 136.0 112 58.9
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 8.3e-30 134.4 138 59.4
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.8e-29 133.3 103 64.1
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 4.1e-29 132.1 103 63.1
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 7.0e-29 131.3 98 72.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 4.5e-28 128.6 103 65.0
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.0e-27 127.5 108 59.3
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.7e-27 126.7 106 62.3
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.3e-27 126.3 107 56.1
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 3.8e-27 125.6 119 54.6
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 9.5e-26 120.9 121 58.7
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.2e-25 120.6 169 47.3
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.8e-24 116.7 106 53.8
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.0e-24 115.9 115 55.7
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.0e-23 113.2 102 55.9
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 5.7e-23 111.7 93 62.4
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.8e-21 106.7 98 54.1
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 5.4e-21 105.1 90 58.9
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.2e-21 104.4 96 66.7
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.2e-20 104.0 99 54.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 2.9e-19 99.4 71 66.2
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.5e-18 96.3 64 78.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 3.3e-18 95.9 119 52.9
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 9.5e-18 94.4 67 73.1
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 6.1e-17 91.7 102 45.1
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 8.0e-17 91.3 101 50.5
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 3.0e-16 89.4 98 42.9
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.2e-15 87.4 84 53.6
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 2.0e-12 76.6 128 35.9


User provided reference genes

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