Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.4e-154 548.9 296 100.0
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 3.1e-146 521.9 296 95.6
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 4.1e-146 521.5 296 95.6
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.2e-102 377.1 312 72.1
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.0e-80 304.3 311 62.1
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 3.6e-78 295.8 309 62.8
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 2.9e-75 286.2 315 60.0
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.9e-74 283.5 297 62.3
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 2.1e-73 280.0 298 59.1
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 3.5e-73 279.3 308 59.1
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.0e-72 277.7 302 61.3
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 6.7e-72 275.0 304 59.5
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 2.8e-70 269.6 251 64.5
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 3.1e-69 266.2 306 56.5
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 6.9e-69 265.0 297 57.9
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 1.5e-68 263.8 221 68.3
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 2.0e-68 263.5 266 63.2
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.0e-68 263.5 294 56.5
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 2.0e-68 263.5 304 56.2
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 7.6e-68 261.5 301 58.8
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.4e-67 258.1 306 54.9
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.1e-66 257.7 307 56.4
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.1e-66 257.7 299 56.9
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 3.2e-66 256.1 304 55.6
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 4.2e-66 255.8 301 55.5
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 7.1e-66 255.0 302 56.3
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.2e-65 254.2 301 55.8
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 1.6e-65 253.8 310 54.2
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.6e-65 253.8 304 55.3
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.6e-65 253.8 234 61.5
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.6e-65 253.8 298 56.4
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 2.1e-65 253.4 272 57.0
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.9e-64 249.2 219 67.1
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.9e-64 249.2 219 67.1
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.1e-63 247.7 219 66.7
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 7.4e-63 245.0 304 54.6
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-61 240.7 226 64.6
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 2.4e-61 240.0 289 56.1
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 4.1e-61 239.2 307 52.8
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 9.0e-61 238.0 320 51.6
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.5e-60 237.3 274 55.8
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 2.0e-60 236.9 218 64.7
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 4.5e-60 235.7 239 60.3
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 5.9e-60 235.3 224 62.5
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 7.6e-60 235.0 310 53.9
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.3e-59 234.2 299 52.8
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.3e-59 234.2 273 55.7
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 2.2e-59 233.4 310 51.9
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 2.9e-59 233.0 260 54.6
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 3.8e-59 232.6 220 63.6
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 5.0e-59 232.3 308 52.9
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 8.5e-59 231.5 308 51.6
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 1.1e-58 231.1 305 51.5
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.4e-58 230.7 317 50.5
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.4e-58 230.7 241 59.3
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.2e-57 227.6 262 55.3
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.6e-57 227.3 224 62.9
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 2.1e-57 226.9 299 52.5
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 2.7e-57 226.5 299 52.2
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 3.6e-57 226.1 217 65.0
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.0e-56 223.0 211 59.7
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.9e-56 222.6 278 52.5
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.9e-56 222.6 291 50.9
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 8.7e-56 221.5 319 48.9
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.1e-55 221.1 237 60.8
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.5e-55 219.9 306 49.3
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 2.5e-55 219.9 272 54.0
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 3.3e-55 219.5 295 50.8
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 5.7e-55 218.8 307 52.1
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.4e-55 218.4 286 54.2
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.3e-54 217.6 287 50.2
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.3e-54 217.6 170 72.9
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.6e-54 217.2 248 55.2
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 6.3e-54 215.3 159 77.4
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 8.2e-54 214.9 268 54.1
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 2.4e-53 213.4 295 49.8
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 3.1e-53 213.0 249 53.8
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 4.1e-53 212.6 313 48.2
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 6.9e-53 211.8 236 55.9
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 6.9e-53 211.8 258 52.3
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 6.9e-53 211.8 289 52.6
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 9.1e-53 211.5 285 48.1
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.5e-52 210.7 305 48.2
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 2.0e-52 210.3 285 47.7
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 2.0e-52 210.3 255 52.2
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 2.0e-52 210.3 285 48.8
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.0e-52 210.3 305 48.2
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 3.4e-52 209.5 255 52.2
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 3.4e-52 209.5 219 56.6
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 5.9e-52 208.8 255 51.8
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 7.7e-52 208.4 227 56.8
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 1.7e-51 207.2 300 47.7
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.9e-51 206.5 309 46.9
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 3.8e-51 206.1 286 49.0
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 3.8e-51 206.1 286 49.0
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.4e-50 204.1 361 42.4
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.9e-50 203.8 291 50.2
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 2.5e-50 203.4 313 46.6
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 3.2e-50 203.0 223 58.7
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 4.2e-50 202.6 284 49.6
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 5.5e-50 202.2 229 57.2
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 9.4e-50 201.4 305 45.9
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.0e-48 198.0 226 54.4
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 1.8e-48 197.2 269 49.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 6.7e-48 195.3 311 44.7
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 8.8e-48 194.9 351 42.2
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 9.7e-47 191.4 418 38.3
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 8.2e-46 188.3 304 46.1
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 4.1e-45 186.0 167 67.1
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.2e-44 184.5 154 68.2
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.5e-44 184.1 216 54.2
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 4.5e-44 182.6 205 57.1
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.0e-43 181.4 241 53.1
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.7e-43 180.6 284 46.1
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 1.8e-40 170.6 250 45.2
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 6.7e-40 168.7 127 77.2
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 8.8e-40 168.3 140 70.0
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 4.8e-38 162.5 214 50.9
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.4e-37 160.2 135 67.4
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 4.1e-37 159.5 192 54.7
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 7.0e-37 158.7 140 67.9
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 9.1e-37 158.3 188 55.3
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 3.5e-36 156.4 110 77.3
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 5.9e-36 155.6 140 63.6
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.9e-34 150.6 116 75.9
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 1.9e-34 150.6 226 46.5
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 3.2e-34 149.8 199 50.3
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.2e-33 147.9 145 62.8
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 4.7e-33 146.0 156 55.1
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 8.0e-33 145.2 150 60.7
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 4.5e-28 129.4 88 79.5
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.6e-25 119.8 118 61.9
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 9.8e-23 111.7 131 52.7
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 4.8e-22 109.4 103 58.3
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 5.0e-19 99.4 101 61.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.1e-18 98.2 203 37.4
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 5.5e-18 95.9 220 37.7
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.2e-17 94.7 88 67.0
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.4e-16 91.3 61 82.0
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 2.0e-15 87.4 101 48.5
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 2.6e-15 87.0 223 34.5
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 9.8e-15 85.1 116 53.4
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.2e-14 84.0 135 47.4
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.8e-14 83.6 78 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 4.9e-14 82.8 217 32.3
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.3e-11 73.9 46 87.0
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 5.6e-10 69.3 49 81.6
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.2e-09 68.2 109 47.7
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 4.4e-07 59.7 133 33.8


User provided reference genes

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