Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 7.5e-72 273.9 149 100.0
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 4.7e-50 201.4 136 80.1
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 4.7e-50 201.4 136 80.1
Haze_24866 Corylus avellana HOM05D007277 ORTHO05D006336 4.0e-49 198.4 146 76.7
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 2.6e-48 195.7 202 62.9
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 6.0e-37 157.9 154 64.9
Cfa002609 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.0e-36 157.1 126 69.8
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 1.3e-36 156.8 121 71.9
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 5.8e-32 141.4 131 62.6
Haze_02030 Corylus avellana HOM05D007277 ORTHO05D006336 5.4e-30 134.8 144 59.7
Cfa002610 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.1e-27 127.1 133 60.2
Haze_24937 Corylus avellana HOM05D007277 ORTHO05D006336 1.2e-26 123.6 113 62.8
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 3.9e-20 102.1 126 52.4
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 5.6e-19 98.2 180 38.9
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-18 97.1 162 43.8
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 2.8e-18 95.9 120 50.0
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 3.6e-18 95.5 122 46.7
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 3.6e-18 95.5 156 44.2
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 1.8e-17 93.2 154 44.2
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 4.0e-17 92.0 147 42.2
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 9.0e-17 90.9 147 40.1
Haze_24923 Corylus avellana HOM05D007277 ORTHO05D006336 2.6e-16 89.4 72 62.5
Rhsim12G0165400 Rhododendron simsii HOM05D007277 ORTHO05D006336 1.3e-15 87.0 99 50.5
QL02p080510 Quercus lobata HOM05D007277 ORTHO05D006336 2.2e-15 86.3 129 43.4
Actinidia10434 Actinidia chinensis HOM05D007277 ORTHO05D006336 3.8e-15 85.5 90 50.0
Atru.chr4.1305 Acer truncatum HOM05D010298 ORTHO05D006336 1.4e-14 83.6 151 37.7
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 3.2e-14 82.4 105 49.5
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 5.4e-14 81.6 113 45.1
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 5.4e-14 81.6 100 43.0
Cpa.g.sc3.198 Carica papaya HOM05D007277 ORTHO05D006336 7.1e-14 81.3 105 49.5
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 1.6e-13 80.1 105 48.6
FvH4_5g13190 Fragaria vesca HOM05D007277 ORTHO05D013598 3.5e-13 79.0 125 41.6
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 3.5e-13 79.0 107 43.9
Atru.chr9.2085 Acer truncatum HOM05D007277 ORTHO05D006336 6.0e-13 78.2 101 48.5
Thecc.03G110900 Theobroma cacao HOM05D007277 ORTHO05D006336 6.0e-13 78.2 161 41.6
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-12 77.0 100 44.0
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-12 77.0 103 43.7
CSS0000915 Camellia sinensis var. sinensis HOM05D007277 ORTHO05D006336 1.8e-12 76.6 100 43.0
QL02p080387 Quercus lobata HOM05D007277 ORTHO05D006336 1.8e-12 76.6 126 41.3
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 5.1e-12 75.1 88 48.9
Dinv36831 Davidia involucrata HOM05D007277 ORTHO05D006336 6.7e-12 74.7 99 42.4
FAN08G1790 Fragaria x ananassa HOM05D007277 ORTHO05D006336 8.7e-12 74.3 149 38.9
Atru.chr4.1303 Acer truncatum HOM05D010298 ORTHO05D012539 1.1e-11 73.9 100 45.0
Actinidia24268 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.1e-11 73.9 90 43.3
FAN08G3205 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.1e-11 73.9 80 52.5
FvH4_5g13130 Fragaria vesca HOM05D007277 ORTHO05D006336 1.9e-11 73.2 154 37.7
FAN08G1781 Fragaria x ananassa HOM05D007277 ORTHO05D006336 3.3e-11 72.4 105 43.8
FAN18G0686 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.3e-11 72.0 150 38.0
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 5.6e-11 71.6 101 41.6
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.6e-11 71.6 103 41.7
FvH4_5g13140 Fragaria vesca HOM05D007277 ORTHO05D006336 7.4e-11 71.2 145 39.3
FAN18G3246 Fragaria x ananassa HOM05D007277 ORTHO05D006336 9.6e-11 70.9 145 39.3
Actinidia22592 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.3e-10 70.5 115 37.4
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 1.6e-10 70.1 102 41.2
FAN18G2870 Fragaria x ananassa HOM05D000423 ORTHO05D000284 1.6e-10 70.1 125 39.2
FvH4_5g13170 Fragaria vesca HOM05D007277 ORTHO05D006336 2.1e-10 69.7 118 40.7
FAN18G2501 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.8e-10 69.3 145 37.9
FvH4_5g13221 Fragaria vesca HOM05D007277 ORTHO05D006336 4.8e-10 68.6 105 41.0
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 6.2e-10 68.2 134 44.8
Potri.017G022262 Populus trichocarpa HOM05D010635 ORTHO05D006336 8.1e-10 67.8 100 42.0
Potri.017G019932 Populus trichocarpa HOM05D010635 ORTHO05D006336 1.1e-09 67.4 148 33.1
Actinidia24271 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.4e-09 67.0 87 40.2
RcHm_v2.0_Chr7g0240781 Rosa chinensis HOM05D007277 ORTHO05D006336 1.4e-09 67.0 118 43.2
Gohir.D07G062800 Gossypium hirsutum HOM05D007277 ORTHO05D006336 1.8e-09 66.6 132 38.6
Solyc03g114650.3 Solanum lycopersicum HOM05D007277 ORTHO05D006336 1.8e-09 66.6 130 34.6
FvH4_5g13220 Fragaria vesca HOM05D007277 ORTHO05D006336 2.4e-09 66.2 119 41.2
Gohir.A07G058000 Gossypium hirsutum HOM05D007277 ORTHO05D006336 3.1e-09 65.9 132 39.4
Potri.017G019000 Populus trichocarpa HOM05D010635 ORTHO05D006336 4.0e-09 65.5 100 41.0
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 6.9e-09 64.7 105 41.0
FvH4_5g13230 Fragaria vesca HOM05D007277 ORTHO05D006336 9.0e-09 64.3 145 35.9
Potri.017G021796 Populus trichocarpa HOM05D010635 ORTHO05D006336 1.2e-08 63.9 100 40.0
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 1.5e-08 63.5 144 35.4
Gorai.001G066300 Gossypium raimondii HOM05D007277 ORTHO05D006336 2.0e-08 63.2 134 38.8
Sopen03g033720 Solanum pennellii HOM05D007277 ORTHO05D006336 2.6e-08 62.8 106 36.8
MD11G1013900 Malus domestica HOM05D007277 ORTHO05D006336 4.5e-08 62.0 157 33.8
Ciclev10024327m.g Citrus clementina HOM05D007277 ORTHO05D006336 5.8e-08 61.6 90 43.3
Potri.007G133200 Populus trichocarpa HOM05D010635 ORTHO05D006336 5.8e-08 61.6 111 36.9
Prupe.6G011200 Prunus persica HOM05D007277 ORTHO05D006336 5.8e-08 61.6 117 40.2
MD03G1011400 Malus domestica HOM05D007277 ORTHO05D006336 7.6e-08 61.2 106 36.8
Ciclev10023444m.g Citrus clementina HOM05D007277 ORTHO05D006336 9.9e-08 60.8 101 38.6
QL10p047937 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-07 60.5 101 32.7
Manes.05G115300 Manihot esculenta HOM05D007277 ORTHO05D006336 1.7e-07 60.1 109 40.4
Sabra17G0002100 Salix brachista HOM05D010635 ORTHO05D006336 2.2e-07 59.7 145 30.3
Sed0012100 Sechium edule HOM05D014519 ORTHO05D006336 2.2e-07 59.7 124 35.5
QL11p034196 Quercus lobata HOM05D007277 ORTHO05D006336 2.9e-07 59.3 92 41.3
TAR371G0786 Trochodendron aralioides HOM05D012741 ORTHO05D006336 2.9e-07 59.3 132 31.8
TAR636G1532 Trochodendron aralioides HOM05D012741 ORTHO05D006336 2.9e-07 59.3 106 35.8
TAR636G3203 Trochodendron aralioides HOM05D012741 ORTHO05D006336 2.9e-07 59.3 103 35.9
Sabra17G0014600 Salix brachista HOM05D010635 ORTHO05D006336 3.8e-07 58.9 145 30.3
PGSC0003DMG400024676 Solanum tuberosum HOM05D007277 ORTHO05D006336 3.8e-07 58.9 119 37.8
Potri.017G018901 Populus trichocarpa HOM05D010635 ORTHO05D006336 6.4e-07 58.2 100 38.0
Prupe.1G109400 Prunus persica HOM05D007277 ORTHO05D006336 6.4e-07 58.2 101 39.6
FAN08G2286 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.4e-06 57.0 92 35.9
MD03G1010100 Malus domestica HOM05D007277 ORTHO05D006336 1.4e-06 57.0 82 43.9
MD14G1141800 Malus domestica HOM05D007277 ORTHO05D006336 1.4e-06 57.0 117 40.2
MD11G1013400 Malus domestica HOM05D007277 ORTHO05D006336 2.4e-06 56.2 109 34.9
Prupe.6G011800 Prunus persica HOM05D007277 ORTHO05D006336 2.4e-06 56.2 148 33.8
PGSC0003DMG400024518 Solanum tuberosum HOM05D007277 ORTHO05D006336 3.2e-06 55.8 107 35.5
Thecc.03G111200 Theobroma cacao HOM05D007277 ORTHO05D006336 3.2e-06 55.8 140 35.7
ClCG04G011490 Citrullus lanatus HOM05D014519 ORTHO05D006336 4.2e-06 55.5 97 37.1
FAN08G2638 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.2e-06 55.5 84 40.5
Atru.chr12.1464 Acer truncatum HOM05D007277 ORTHO05D006336 7.1e-06 54.7 135 34.1
TAR371G1039 Trochodendron aralioides HOM05D012741 ORTHO05D006336 9.3e-06 54.3 144 31.9


User provided reference genes

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