Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 3.7e-58 228.4 155 100.0
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 3.9e-47 191.8 152 85.5
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 4.3e-30 135.2 157 51.0
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 4.2e-25 118.6 159 52.2
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 2.8e-21 105.9 151 45.7
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 6.5e-18 94.7 160 41.9
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 3.2e-17 92.4 143 39.2
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 7.1e-17 91.3 156 42.9
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 7.9e-16 87.8 155 40.6
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 2.5e-14 82.8 160 56.2
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 5.7e-14 81.6 154 55.8
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 7.4e-14 81.3 151 41.1
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 7.4e-14 81.3 151 41.1
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 9.7e-14 80.9 157 41.4
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 9.7e-14 80.9 151 41.1
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 2.8e-13 79.3 154 50.6
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.1e-12 77.4 153 51.0
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 1.8e-12 76.6 154 39.0
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 3.1e-12 75.9 156 52.6
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 6.9e-12 74.7 138 45.7
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 9.0e-12 74.3 154 53.2
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 9.0e-12 74.3 153 41.8
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 9.0e-12 74.3 133 36.8
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 1.5e-11 73.6 141 42.6
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 2.6e-11 72.8 154 37.0
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 3.4e-11 72.4 130 36.2
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 3.4e-11 72.4 148 51.4
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 4.5e-11 72.0 138 37.7
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 5.9e-11 71.6 166 41.6
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.0e-10 70.9 165 40.0
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.3e-10 70.5 140 52.1
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 2.2e-10 69.7 156 42.9
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 3.8e-10 68.9 125 50.4
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 3.8e-10 68.9 133 35.3
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 5.0e-10 68.6 125 50.4
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 6.5e-10 68.2 144 38.2
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 8.5e-10 67.8 140 36.4
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 1.1e-09 67.4 163 39.3
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 1.1e-09 67.4 140 52.1
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 1.9e-09 66.6 147 36.7
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 1.9e-09 66.6 127 37.8
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.5e-09 66.2 170 40.0
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 2.5e-09 66.2 140 38.6
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 5.5e-09 65.1 151 32.5
Sabra05G0058900 Salix brachista HOM05D008176 ORTHO05D004477 5.5e-09 65.1 154 56.5
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 7.2e-09 64.7 127 40.9
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 9.4e-09 64.3 156 49.4
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 9.4e-09 64.3 138 33.3
TWI74G1149 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 1.6e-08 63.5 136 50.0
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 2.1e-08 63.2 145 51.0
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 2.7e-08 62.8 141 32.6
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 3.6e-08 62.4 144 37.5
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 3.6e-08 62.4 150 32.7
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 4.6e-08 62.0 145 50.3
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 4.6e-08 62.0 145 50.3
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 6.1e-08 61.6 140 53.6
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 6.1e-08 61.6 138 44.2
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 7.9e-08 61.2 153 41.8
CANSAT01G0943 Cannabis sativa HOM05D013332 ORTHO05D004477 7.9e-08 61.2 151 49.7
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 1.0e-07 60.8 137 46.0
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 1.0e-07 60.8 137 40.1
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 1.0e-07 60.8 149 32.9
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 1.0e-07 60.8 152 37.5
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 1.4e-07 60.5 129 34.9
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 1.4e-07 60.5 128 34.4
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.8e-07 60.1 153 41.8
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.8e-07 60.1 153 46.4
Cpa.g.sc36.179 Carica papaya HOM05D008046 ORTHO05D004477 2.3e-07 59.7 154 50.0
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.3e-07 59.7 136 31.6
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 3.0e-07 59.3 150 48.7
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.9e-07 58.9 136 31.6
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 3.9e-07 58.9 141 44.0
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 3.9e-07 58.9 143 48.3
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 5.1e-07 58.5 138 46.4
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 5.1e-07 58.5 134 32.1
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 5.1e-07 58.5 152 32.2
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 6.7e-07 58.2 140 48.6
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 8.8e-07 57.8 131 56.5
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 8.8e-07 57.8 176 35.2
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 1.5e-06 57.0 142 29.6
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 2.5e-06 56.2 144 45.1
DCAR_014203 Daucus carota HOM05D013332 ORTHO05D004477 3.3e-06 55.8 154 40.9
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 3.3e-06 55.8 122 34.4
SalBow3G2508 Salvia bowleyana HOM05D029310 ORTHO05D004477 3.3e-06 55.8 129 34.9
SalBow3G3284 Salvia bowleyana HOM05D029310 ORTHO05D004477 3.3e-06 55.8 129 34.9
CSS0015684 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.3e-06 55.5 135 60.7
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 4.3e-06 55.5 130 33.8
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 5.7e-06 55.1 141 31.9
Ah.02g126210 Amaranthus hybridus HOM05D031888 ORTHO05D004477 7.4e-06 54.7 179 34.6
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 7.4e-06 54.7 155 39.4
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 7.4e-06 54.7 152 49.3
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 7.4e-06 54.7 151 41.7
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 7.4e-06 54.7 145 49.0
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 7.4e-06 54.7 151 28.5


User provided reference genes

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