Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002595 Carpinus fangiana HOM05D000038 ORTHO05D028570 1.9e-53 212.2 104 100.0
Cfa002850 Carpinus fangiana HOM05D000038 ORTHO05D000143 1.4e-11 73.2 34 97.1
Cfa002839 Carpinus fangiana HOM05D000038 ORTHO05D000143 3.0e-11 72.0 34 94.1
Dinv05703 Davidia involucrata HOM05D000038 ORTHO05D000143 3.0e-11 72.0 34 94.1
CiPaw.03G127400 Carya illinoinensis HOM05D000038 ORTHO05D000143 5.1e-11 71.2 51 68.6
QL01p055210 Quercus lobata HOM05D000038 ORTHO05D000143 5.1e-11 71.2 47 72.3
QL10p049982 Quercus lobata HOM05D000038 ORTHO05D000143 5.1e-11 71.2 47 72.3
Prupe.6G158700 Prunus persica HOM05D000038 ORTHO05D000143 6.7e-11 70.9 34 91.2
Prupe.6G159000 Prunus persica HOM05D000013 ORTHO05D000143 6.7e-11 70.9 34 91.2
Prupe.6G164400 Prunus persica HOM05D000038 ORTHO05D000143 6.7e-11 70.9 34 91.2
CiPaw.03G126100 Carya illinoinensis HOM05D000038 ORTHO05D000143 8.8e-11 70.5 34 91.2
CiPaw.03G126400 Carya illinoinensis HOM05D000038 ORTHO05D000143 8.8e-11 70.5 34 91.2
Dinv05704 Davidia involucrata HOM05D000038 ORTHO05D000143 8.8e-11 70.5 34 91.2
CiPaw.03G126600 Carya illinoinensis HOM05D000038 ORTHO05D000143 1.1e-10 70.1 34 88.2
Haze_25142 Corylus avellana HOM05D000038 ORTHO05D000143 1.5e-10 69.7 35 88.6
Prupe.6G158900 Prunus persica HOM05D000038 ORTHO05D000143 1.5e-10 69.7 34 88.2
CiPaw.03G125400 Carya illinoinensis HOM05D000038 ORTHO05D000143 2.0e-10 69.3 34 91.2
CiPaw.03G126900 Carya illinoinensis HOM05D000038 ORTHO05D000143 2.0e-10 69.3 34 88.2
Haze_25148 Corylus avellana HOM05D000038 ORTHO05D000143 2.0e-10 69.3 35 88.6
FvH4_1g23370 Fragaria vesca HOM05D000038 ORTHO05D000143 2.0e-10 69.3 34 88.2
FAN26G0352 Fragaria x ananassa HOM05D000038 ORTHO05D000143 2.0e-10 69.3 34 88.2
Prupe.6G164900 Prunus persica HOM05D000038 ORTHO05D000143 2.0e-10 69.3 34 88.2
Prupe.6G158300 Prunus persica HOM05D000013 ORTHO05D000143 2.5e-10 68.9 34 88.2
QL12p018377 Quercus lobata HOM05D000038 ORTHO05D000143 3.3e-10 68.6 34 88.2
CiPaw.03G126200 Carya illinoinensis HOM05D000038 ORTHO05D000143 4.3e-10 68.2 34 88.2
CiPaw.03G127000 Carya illinoinensis HOM05D000038 ORTHO05D000143 4.3e-10 68.2 34 88.2
CiPaw.03G189900 Carya illinoinensis HOM05D000038 ORTHO05D000143 4.3e-10 68.2 34 88.2
MD15G1391000 Malus domestica HOM05D000038 ORTHO05D000143 4.3e-10 68.2 34 85.3
MD15G1391100 Malus domestica HOM05D000038 ORTHO05D000143 4.3e-10 68.2 34 85.3
Haze_01613 Corylus avellana HOM05D000038 ORTHO05D000143 5.7e-10 67.8 47 70.2
CiPaw.03G125500 Carya illinoinensis HOM05D000038 ORTHO05D000143 7.4e-10 67.4 34 88.2
Hma1.2p1_0006F.1_g004770 Hydrangea macrophylla HOM05D000038 ORTHO05D000143 7.4e-10 67.4 34 82.4
Rhsim10G0139500 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.3e-09 66.6 34 82.4
RcHm_v2.0_Chr2g0118331 Rosa chinensis HOM05D000038 ORTHO05D000143 1.3e-09 66.6 34 85.3
Atru.chr4.924 Acer truncatum HOM05D000038 ORTHO05D000143 1.7e-09 66.2 34 79.4
Atru.chr4.928 Acer truncatum HOM05D000038 ORTHO05D000143 1.7e-09 66.2 34 79.4
QL10p050060 Quercus lobata HOM05D000038 ORTHO05D000143 1.7e-09 66.2 48 66.7
Rhsim10G0140100 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.7e-09 66.2 34 85.3
CSS0005436 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 2.2e-09 65.9 34 79.4
Cfa017762 Carpinus fangiana HOM05D001143 ORTHO05D000143 2.2e-09 65.9 34 85.3
Haze_25266 Corylus avellana HOM05D000038 ORTHO05D000143 2.2e-09 65.9 49 63.3
Cfa001166 Carpinus fangiana HOM05D000038 ORTHO05D000143 2.8e-09 65.5 53 62.3
Hma1.2p1_0134F.1_g061630 Hydrangea macrophylla HOM05D000038 ORTHO05D000143 2.8e-09 65.5 34 79.4
QL01p055349 Quercus lobata HOM05D000038 ORTHO05D000143 2.8e-09 65.5 47 66.0
QL05p076666 Quercus lobata HOM05D000038 ORTHO05D000143 2.8e-09 65.5 34 76.5
Rhsim10G0140400 Rhododendron simsii HOM05D000038 ORTHO05D000143 2.8e-09 65.5 34 82.4
Atru.chr4.926 Acer truncatum HOM05D000038 ORTHO05D000143 3.7e-09 65.1 34 79.4
QL12p033730 Quercus lobata HOM05D000038 ORTHO05D028570 3.7e-09 65.1 46 65.2
FAN23G2277 Fragaria x ananassa HOM05D000038 ORTHO05D000143 4.8e-09 64.7 34 82.4
QL12p018393 Quercus lobata HOM05D000038 ORTHO05D000143 4.8e-09 64.7 34 82.4
CiPaw.03G125800 Carya illinoinensis HOM05D000038 ORTHO05D000143 6.3e-09 64.3 35 88.6
Rhsim10G0139700 Rhododendron simsii HOM05D000038 ORTHO05D000143 6.3e-09 64.3 34 79.4
Cfa017760 Carpinus fangiana HOM05D000038 ORTHO05D000143 8.2e-09 63.9 34 82.4
RcHm_v2.0_Chr2g0118591 Rosa chinensis HOM05D000038 ORTHO05D000143 8.2e-09 63.9 34 79.4
Atru.chr9.1771 Acer truncatum HOM05D000038 ORTHO05D000143 1.1e-08 63.5 47 68.1
MSTRG.23430 Avicennia marina HOM05D000038 ORTHO05D000143 1.1e-08 63.5 34 82.4
Lj2A595G18 Lonicera japonica HOM05D000038 ORTHO05D000143 1.1e-08 63.5 34 79.4
MSTRG.23427 Avicennia marina HOM05D000038 ORTHO05D000143 1.4e-08 63.2 34 79.4
Rhsim10G0139200 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.4e-08 63.2 34 79.4
CSS0046269 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 1.8e-08 62.8 34 79.4
FvH4_1g23380 Fragaria vesca HOM05D000038 ORTHO05D000143 1.8e-08 62.8 34 79.4
Oeu020609.1 Olea europaea HOM05D000038 ORTHO05D000143 1.8e-08 62.8 34 82.4
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.8e-08 62.8 34 76.5
RcHm_v2.0_Chr2g0118321 Rosa chinensis HOM05D000038 ORTHO05D000143 1.8e-08 62.8 34 76.5
vmacro12837 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 1.8e-08 62.8 34 79.4
vmacro12839 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 1.8e-08 62.8 34 79.4
Duzib187G0473 Durio zibethinus HOM05D000038 ORTHO05D000143 2.4e-08 62.4 34 79.4
Duzib187G1542 Durio zibethinus HOM05D000038 ORTHO05D000143 2.4e-08 62.4 34 79.4
Eucgr.I00232 Eucalyptus grandis HOM05D000038 ORTHO05D000143 2.4e-08 62.4 34 79.4
FAN23G0794 Fragaria x ananassa HOM05D000038 ORTHO05D000143 2.4e-08 62.4 34 79.4
Manes.13G071300 Manihot esculenta HOM05D000038 ORTHO05D000143 2.4e-08 62.4 34 76.5
QL11p009169 Quercus lobata HOM05D000038 ORTHO05D000143 2.4e-08 62.4 34 79.4
QL12p033758 Quercus lobata HOM05D000038 ORTHO05D000143 2.4e-08 62.4 34 76.5
Cc07_g17630 Coffea canephora HOM05D000038 ORTHO05D000143 3.1e-08 62.0 34 76.5
Cc07_g17640 Coffea canephora HOM05D000038 ORTHO05D000143 3.1e-08 62.0 34 76.5
Gohir.A05G386800 Gossypium hirsutum HOM05D000038 ORTHO05D000143 3.1e-08 62.0 34 73.5
Oeu004254.1 Olea europaea HOM05D000038 ORTHO05D000143 3.1e-08 62.0 34 82.4
Oeu033364.1 Olea europaea HOM05D000038 ORTHO05D000143 3.1e-08 62.0 34 82.4
Atru.chr9.1769 Acer truncatum HOM05D000038 ORTHO05D000143 4.1e-08 61.6 35 80.0
Haze_05741 Corylus avellana HOM05D000038 ORTHO05D000143 4.1e-08 61.6 56 62.5
Haze_25301 Corylus avellana HOM05D000038 ORTHO05D000143 4.1e-08 61.6 34 82.4
Oeu028488.2 Olea europaea HOM05D000038 ORTHO05D000143 4.1e-08 61.6 34 82.4
Oeu028489.1 Olea europaea HOM05D000038 ORTHO05D000143 4.1e-08 61.6 34 82.4
vmacro12838 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 4.1e-08 61.6 34 76.5
vmacro12840 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 4.1e-08 61.6 34 76.5
CSS0006119 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 5.3e-08 61.2 34 79.4
Haze_25293 Corylus avellana HOM05D000038 ORTHO05D000143 5.3e-08 61.2 34 79.4
Duzib187G1882 Durio zibethinus HOM05D000038 ORTHO05D000143 5.3e-08 61.2 34 79.4
Cc07_g17690 Coffea canephora HOM05D000038 ORTHO05D000143 6.9e-08 60.8 34 76.5
Eucgr.I00233 Eucalyptus grandis HOM05D000038 ORTHO05D000143 6.9e-08 60.8 34 76.5
QL03p029816 Quercus lobata HOM05D000038 ORTHO05D000143 6.9e-08 60.8 34 76.5
Rhsim10G0139800 Rhododendron simsii HOM05D000038 ORTHO05D000143 6.9e-08 60.8 59 54.2
Cfa017759 Carpinus fangiana HOM05D000038 ORTHO05D000143 9.1e-08 60.5 34 79.4
Cc07_g17710 Coffea canephora HOM05D000038 ORTHO05D000143 9.1e-08 60.5 34 73.5
Lj2A596T42 Lonicera japonica HOM05D000038 ORTHO05D000143 9.1e-08 60.5 34 76.5
Lj2A599T26 Lonicera japonica HOM05D000038 ORTHO05D000143 9.1e-08 60.5 34 76.5
QL01p055416 Quercus lobata HOM05D000038 ORTHO05D000143 9.1e-08 60.5 47 63.8
Actinidia06656 Actinidia chinensis HOM05D000038 ORTHO05D000143 1.2e-07 60.1 34 76.5
MSTRG.23432 Avicennia marina HOM05D000038 ORTHO05D000143 1.2e-07 60.1 34 79.4
CSS0019074 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 1.2e-07 60.1 34 76.5
Gorai.012G032900 Gossypium raimondii HOM05D000038 ORTHO05D000143 1.2e-07 60.1 34 70.6
Lj2C599G1 Lonicera japonica HOM05D000038 ORTHO05D000143 1.2e-07 60.1 34 73.5
Cfa000862 Carpinus fangiana HOM05D000038 ORTHO05D000143 1.5e-07 59.7 33 78.8
Gohir.D04G029400 Gossypium hirsutum HOM05D000038 ORTHO05D000143 1.5e-07 59.7 34 70.6
Gohir.D04G029600 Gossypium hirsutum HOM05D000038 ORTHO05D000143 1.5e-07 59.7 34 70.6
Gorai.012G033000 Gossypium raimondii HOM05D000038 ORTHO05D000143 1.5e-07 59.7 34 70.6
QL10p049917 Quercus lobata HOM05D000038 ORTHO05D000143 1.5e-07 59.7 34 79.4
GSVIVG01026549001 Vitis vinifera HOM05D000038 ORTHO05D000143 1.5e-07 59.7 34 76.5
ECA233G5244 Erigeron canadensis HOM05D000038 ORTHO05D000143 2.0e-07 59.3 34 76.5
Oeu020610.2 Olea europaea HOM05D000038 ORTHO05D000143 2.0e-07 59.3 34 79.4
Cc07_g17740 Coffea canephora HOM05D000038 ORTHO05D000143 2.6e-07 58.9 34 73.5
ECA233G0887 Erigeron canadensis HOM05D000038 ORTHO05D000143 2.6e-07 58.9 55 56.4
Gohir.A05G386600 Gossypium hirsutum HOM05D000038 ORTHO05D000143 2.6e-07 58.9 34 67.6
HanXRQChr08g0225051 Helianthus annuus HOM05D000038 ORTHO05D000143 2.6e-07 58.9 34 76.5
Lj2C600T3 Lonicera japonica HOM05D000038 ORTHO05D000143 2.6e-07 58.9 72 50.0
Actinidia27704 Actinidia chinensis HOM05D054098 ORTHO05D000143 3.4e-07 58.5 34 73.5
MSTRG.23428 Avicennia marina HOM05D000038 ORTHO05D000143 3.4e-07 58.5 34 73.5
Cc07_g17730 Coffea canephora HOM05D000038 ORTHO05D000143 3.4e-07 58.5 34 73.5
Cc07_g17750 Coffea canephora HOM05D000038 ORTHO05D000143 3.4e-07 58.5 34 73.5
ECA233G2730 Erigeron canadensis HOM05D000038 ORTHO05D000143 3.4e-07 58.5 34 73.5
Eucgr.I00234 Eucalyptus grandis HOM05D000038 ORTHO05D000143 4.5e-07 58.2 59 52.5
Cc07_g17700 Coffea canephora HOM05D000038 ORTHO05D000143 5.9e-07 57.8 34 70.6
PGR102G0075 Punica granatum HOM05D000038 ORTHO05D000143 5.9e-07 57.8 34 67.6
PGR102G0535 Punica granatum HOM05D000038 ORTHO05D000143 5.9e-07 57.8 34 67.6
PGR102G2439 Punica granatum HOM05D000038 ORTHO05D000143 5.9e-07 57.8 34 70.6
Eucgr.H04929 Eucalyptus grandis HOM05D000038 ORTHO05D000143 7.7e-07 57.4 40 62.5
Gohir.D04G029300 Gossypium hirsutum HOM05D000038 ORTHO05D000143 7.7e-07 57.4 34 67.6
Gohir.D04G029500 Gossypium hirsutum HOM05D000038 ORTHO05D000143 7.7e-07 57.4 34 67.6
Thecc.01G124100 Theobroma cacao HOM05D000038 ORTHO05D000143 1.0e-06 57.0 35 74.3
Cc07_g17760 Coffea canephora HOM05D000038 ORTHO05D000143 1.3e-06 56.6 34 70.6
Dinv05198 Davidia involucrata HOM05D000038 ORTHO05D000143 1.3e-06 56.6 34 70.6
HanXRQChr08g0224801 Helianthus annuus HOM05D000038 ORTHO05D000143 1.7e-06 56.2 34 70.6
Potri.005G056700 Populus trichocarpa HOM05D000038 ORTHO05D000143 1.7e-06 56.2 34 67.6
Potri.005G056800 Populus trichocarpa HOM05D000038 ORTHO05D000143 1.7e-06 56.2 34 67.6
RcHm_v2.0_Chr2g0118601 Rosa chinensis HOM05D000038 ORTHO05D000143 1.7e-06 56.2 35 77.1
Lsat_1_v5_gn_8_34901 Lactuca sativa HOM05D000038 ORTHO05D000143 2.2e-06 55.8 34 73.5
Lsat_1_v5_gn_8_35060 Lactuca sativa HOM05D000038 ORTHO05D000143 2.2e-06 55.8 34 73.5
Lsat_1_v5_gn_8_35781 Lactuca sativa HOM05D000038 ORTHO05D000143 2.2e-06 55.8 51 56.9
Lj2C594T7 Lonicera japonica HOM05D000038 ORTHO05D000143 2.2e-06 55.8 35 74.3
HanXRQChr08g0224681 Helianthus annuus HOM05D000038 ORTHO05D000143 2.9e-06 55.5 34 70.6
Potri.005G057000 Populus trichocarpa HOM05D000038 ORTHO05D000143 2.9e-06 55.5 34 67.6
Ciclev10027387m.g Citrus clementina HOM05D000038 ORTHO05D000143 3.8e-06 55.1 36 69.4
Dinv05695 Davidia involucrata HOM05D000038 ORTHO05D000143 3.8e-06 55.1 51 52.9
QL10p007422 Quercus lobata HOM05D000038 ORTHO05D000143 3.8e-06 55.1 45 62.2
Thecc.01G124000 Theobroma cacao HOM05D000038 ORTHO05D000143 3.8e-06 55.1 50 56.0
TAR628G1163 Trochodendron aralioides HOM05D000038 ORTHO05D000143 3.8e-06 55.1 34 67.6
Cfa000741 Carpinus fangiana HOM05D000038 ORTHO05D000143 6.5e-06 54.3 33 78.8
Duzib187G1796 Durio zibethinus HOM05D000038 ORTHO05D000143 6.5e-06 54.3 67 49.3
Oeu028487.1 Olea europaea HOM05D000038 ORTHO05D000143 6.5e-06 54.3 33 72.7
CANSAT25G0916 Cannabis sativa HOM05D000038 ORTHO05D000143 8.5e-06 53.9 34 67.6
Ciclev10027040m.g Citrus clementina HOM05D000038 ORTHO05D000143 8.5e-06 53.9 49 57.1
ECA233G5599 Erigeron canadensis HOM05D000038 ORTHO05D000143 8.5e-06 53.9 34 67.6
TAR628G0465 Trochodendron aralioides HOM05D000038 ORTHO05D000143 8.5e-06 53.9 34 67.6


User provided reference genes

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