Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002472 Carpinus fangiana HOM05D009253 ORTHO05D010845 2.3e-44 181.8 90 100.0
Prupe.8G216600 Prunus persica HOM05D009253 ORTHO05D010845 3.6e-21 104.8 87 57.5
Manes.12G035800 Manihot esculenta HOM05D009253 ORTHO05D010845 2.4e-20 102.1 87 57.5
CiPaw.03G269700 Carya illinoinensis HOM05D009253 ORTHO05D010845 3.1e-20 101.7 79 65.8
Manes.13G040700 Manihot esculenta HOM05D009253 ORTHO05D010845 1.5e-19 99.4 87 57.5
RcHm_v2.0_Chr6g0286891 Rosa chinensis HOM05D009253 ORTHO05D010845 2.2e-18 95.5 87 58.6
CiPaw.04G189600 Carya illinoinensis HOM05D009253 ORTHO05D010845 6.4e-18 94.0 78 59.0
TAR365G0673 Trochodendron aralioides HOM05D009253 ORTHO05D010845 7.1e-17 90.5 73 57.5
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 2.1e-16 89.0 87 51.7
Gohir.D07G157500 Gossypium hirsutum HOM05D009253 ORTHO05D010845 1.7e-15 85.9 79 53.2
COL.COLO4_10585 Corchorus olitorius HOM05D009253 ORTHO05D010845 3.9e-15 84.7 80 53.8
Gohir.A07G150900 Gossypium hirsutum HOM05D009253 ORTHO05D010845 8.7e-15 83.6 79 51.9
Potri.014G192100 Populus trichocarpa HOM05D009253 ORTHO05D010845 8.7e-15 83.6 87 55.2
FAN20G2031 Fragaria x ananassa HOM05D009253 ORTHO05D010845 9.6e-14 80.1 76 52.6
Phvul.001G164100 Phaseolus vulgaris HOM05D009253 ORTHO05D010845 2.8e-13 78.6 78 53.8
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 4.7e-13 77.8 90 47.8
TAR362G0345 Trochodendron aralioides HOM05D009253 ORTHO05D010845 4.7e-13 77.8 87 51.7
Glyma.10G039800 Glycine max HOM05D009253 ORTHO05D010845 6.2e-13 77.4 87 51.7
Glyma.03G166600 Glycine max HOM05D009253 ORTHO05D010845 1.8e-12 75.9 61 60.7
Phvul.007G190000 Phaseolus vulgaris HOM05D009253 ORTHO05D010845 3.1e-12 75.1 86 48.8
Hma1.2p1_1112F.1_g258640 Hydrangea macrophylla HOM05D009253 ORTHO05D010845 5.3e-12 74.3 87 42.5
CAN.G1395.1 Capsicum annuum HOM05D019196 ORTHO05D010845 2.6e-11 72.0 72 47.2
Sopen09g028650 Solanum pennellii HOM05D019196 ORTHO05D010845 4.4e-11 71.2 83 47.0
CsaV3_3G028270 Cucumis sativus L. HOM05D009253 ORTHO05D010845 7.6e-11 70.5 85 45.9
Sed0026815 Sechium edule HOM05D009253 ORTHO05D010845 9.9e-11 70.1 79 53.2
Glyma.13G126300 Glycine max HOM05D009253 ORTHO05D010845 1.3e-10 69.7 90 48.9
Oeu052072.1 Olea europaea HOM05D019196 ORTHO05D010845 1.3e-10 69.7 86 41.9
Sed0026637 Sechium edule HOM05D009253 ORTHO05D010845 1.7e-10 69.3 82 51.2
Glyma.19G167700 Glycine max HOM05D009253 ORTHO05D010845 2.9e-10 68.6 62 58.1
TPR.G2669 Trifolium pratense HOM05D009253 ORTHO05D010845 2.9e-10 68.6 87 42.5
VMungo1383G1487 Vigna mungo HOM05D009253 ORTHO05D010845 3.8e-10 68.2 91 46.2
TPR.G31881 Trifolium pratense HOM05D009253 ORTHO05D010845 4.9e-10 67.8 75 48.0
Nn1g02939 Nelumbo nucifera HOM05D019196 ORTHO05D010845 6.4e-10 67.4 65 53.8
Lj5g0016892 Lotus japonicus HOM05D009253 ORTHO05D010845 1.4e-09 66.2 91 46.2
Gohir.D11G139000 Gossypium hirsutum HOM05D040896 ORTHO05D010845 1.9e-09 65.9 79 49.4
CSS0049490 Camellia sinensis var. sinensis HOM05D019196 ORTHO05D010845 3.2e-09 65.1 83 48.2
Gorai.007G149200 Gossypium raimondii HOM05D040896 ORTHO05D010845 7.1e-09 63.9 79 48.1
Medtr7g098280 Medicago truncatula HOM05D009253 ORTHO05D010845 9.3e-09 63.5 67 49.3
Gohir.A11G132900 Gossypium hirsutum HOM05D040896 ORTHO05D010845 3.5e-08 61.6 79 46.8
CSS0011456 Camellia sinensis var. sinensis HOM05D019196 ORTHO05D010845 4.6e-08 61.2 84 45.2
Rhsim01G0261100 Rhododendron simsii HOM05D000647 ORTHO05D000485 6.0e-08 60.8 95 45.3
CARHR179290 Cardamine hirsuta HOM05D010454 ORTHO05D012601 1.0e-07 60.1 89 42.7
THA.LOC109117257 Tarenaya hassleriana HOM05D010454 ORTHO05D012601 1.0e-07 60.1 83 43.4
Lalb_Chr06g0170671 Lupinus albus HOM05D009253 ORTHO05D010845 1.7e-07 59.3 87 40.2
CSS0015409 Camellia sinensis var. sinensis HOM05D019196 ORTHO05D010845 3.0e-07 58.5 77 44.2
BcaC04g21878 Brassica carinata HOM05D010454 ORTHO05D012601 5.1e-07 57.8 92 41.3
C09p26250 Brassica napus HOM05D010454 ORTHO05D012601 5.1e-07 57.8 92 41.3
BolC9t55526H Brassica oleracea HOM05D010454 ORTHO05D012601 5.1e-07 57.8 92 41.3
AT5G44005 Arabidopsis thaliana HOM05D010454 ORTHO05D012601 6.6e-07 57.4 86 41.9
Psat6g063040 Pisum sativum HOM05D009253 ORTHO05D010845 6.6e-07 57.4 73 47.9
Sabra02G0196000 Salix brachista HOM05D045422 ORTHO05D010845 1.5e-06 56.2 34 67.6
Potri.002G257600 Populus trichocarpa HOM05D045422 ORTHO05D010845 1.9e-06 55.8 36 63.9
AL8G16080 Arabidopsis lyrata HOM05D010454 ORTHO05D012601 9.6e-06 53.5 86 39.5


User provided reference genes

Program Settings