Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002441 Carpinus fangiana HOM05D000010 ORTHO05D003754 5.0e-58 227.6 122 100.0
Haze_24647 Corylus avellana HOM05D000010 ORTHO05D003754 8.6e-50 200.3 124 90.3
QL09p039538 Quercus lobata HOM05D000010 ORTHO05D003754 1.6e-27 126.3 115 64.3
CiPaw.03G265800 Carya illinoinensis HOM05D000010 ORTHO05D003754 1.6e-24 116.3 118 60.2
CiPaw.04G187600 Carya illinoinensis HOM05D000010 ORTHO05D003754 3.4e-22 108.6 106 65.1
Prupe.8G221900 Prunus persica HOM05D000010 ORTHO05D003754 3.5e-19 98.6 118 55.1
FAN20G0090 Fragaria x ananassa HOM05D000010 ORTHO05D003754 6.6e-18 94.4 125 52.8
Thecc.01G256300 Theobroma cacao HOM05D000010 ORTHO05D003754 6.6e-18 94.4 113 52.2
FvH4_2g21280 Fragaria vesca HOM05D000010 ORTHO05D003754 1.1e-17 93.6 125 52.0
FAN15G0273 Fragaria x ananassa HOM05D000010 ORTHO05D003754 1.1e-17 93.6 125 52.0
RcHm_v2.0_Chr6g0287861 Rosa chinensis HOM05D000010 ORTHO05D003754 1.9e-17 92.8 129 51.2
FAN27G1834 Fragaria x ananassa HOM05D000010 ORTHO05D003754 3.3e-17 92.0 125 51.2
FAN24G2546 Fragaria x ananassa HOM05D000010 ORTHO05D003754 9.6e-17 90.5 125 51.2
CSS0001450 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003754 2.1e-16 89.4 124 47.6
Glyma.03G164200 Glycine max HOM05D000010 ORTHO05D003754 2.8e-16 89.0 127 45.7
Sabra02G0030000 Salix brachista HOM05D000010 ORTHO05D003754 2.8e-16 89.0 122 54.1
TAR365G0424 Trochodendron aralioides HOM05D000010 ORTHO05D003754 3.6e-16 88.6 112 51.8
Potri.005G225800 Populus trichocarpa HOM05D000010 ORTHO05D003754 4.8e-16 88.2 123 52.8
Medtr7g097090 Medicago truncatula HOM05D000010 ORTHO05D003754 2.4e-15 85.9 112 45.5
TWI12G0433 Tripterygium wilfordii HOM05D000010 ORTHO05D003754 1.5e-14 83.2 129 49.6
Glyma.19G165600 Glycine max HOM05D000010 ORTHO05D003754 2.6e-14 82.4 112 46.4
Manes.12G033500 Manihot esculenta HOM05D000010 ORTHO05D003754 3.4e-14 82.0 125 51.2
Phvul.001G161700 Phaseolus vulgaris HOM05D000010 ORTHO05D003754 3.4e-14 82.0 125 53.6
Atru.chr5.1715 Acer truncatum HOM05D000010 ORTHO05D003754 4.5e-14 81.6 120 45.0
Sabra05G0174200 Salix brachista HOM05D000010 ORTHO05D003754 7.6e-14 80.9 127 48.8
Lalb_Chr02g0152521 Lupinus albus HOM05D000010 ORTHO05D003754 9.9e-14 80.5 106 50.9
Potri.002G037100 Populus trichocarpa HOM05D000010 ORTHO05D003754 1.3e-13 80.1 125 54.4
GSVIVG01028354001 Vitis vinifera HOM05D000010 ORTHO05D003754 3.8e-13 78.6 117 48.7
Ca_09675_v3 Cicer arietinum L. HOM05D000010 ORTHO05D003754 4.9e-13 78.2 108 48.1
Lalb_Chr21g0313911 Lupinus albus HOM05D000010 ORTHO05D003754 6.4e-13 77.8 111 53.2
Gorai.001G178800 Gossypium raimondii HOM05D000010 ORTHO05D003754 3.2e-12 75.5 132 40.9
MD05G1195300 Malus domestica HOM05D000010 ORTHO05D003754 7.1e-12 74.3 106 46.2
TWI18G1287 Tripterygium wilfordii HOM05D000010 ORTHO05D003754 1.6e-11 73.2 114 48.2
COL.COLO4_04029 Corchorus olitorius HOM05D000010 ORTHO05D003754 2.7e-11 72.4 115 45.2
Duzib133G1096 Durio zibethinus HOM05D000010 ORTHO05D003754 2.7e-11 72.4 125 44.0
TAR633G0192 Trochodendron aralioides HOM05D000010 ORTHO05D003754 2.7e-11 72.4 122 41.0
Gohir.D07G155900 Gossypium hirsutum HOM05D000010 ORTHO05D003754 3.5e-11 72.0 132 39.4
Medtr1g069805 Medicago truncatula HOM05D000010 ORTHO05D003754 6.0e-11 71.2 107 46.7
Lj1g0019486 Lotus japonicus HOM05D000010 ORTHO05D003754 7.9e-11 70.9 109 44.0
Gorai.001G254300 Gossypium raimondii HOM05D000010 ORTHO05D003754 1.0e-10 70.5 117 40.2
Hma1.2p1_0273F.1_g109570 Hydrangea macrophylla HOM05D000010 ORTHO05D003754 1.0e-10 70.5 125 39.2
Sed0011992 Sechium edule HOM05D000010 ORTHO05D003754 1.8e-10 69.7 124 38.7
VMungo0720G1657 Vigna mungo HOM05D000010 ORTHO05D003754 1.8e-10 69.7 118 44.9
Gohir.A07G213700 Gossypium hirsutum HOM05D000010 ORTHO05D003754 2.3e-10 69.3 116 42.2
Actinidia25799 Actinidia chinensis HOM05D000010 ORTHO05D003754 3.9e-10 68.6 116 42.2
Gohir.A07G149600 Gossypium hirsutum HOM05D000010 ORTHO05D003754 3.9e-10 68.6 132 40.2
Psat6g053920 Pisum sativum HOM05D000010 ORTHO05D003754 3.9e-10 68.6 107 44.9
Sed0017456 Sechium edule HOM05D000010 ORTHO05D003754 3.9e-10 68.6 124 37.9
Manes.13G035201 Manihot esculenta HOM05D000010 ORTHO05D003754 6.7e-10 67.8 76 55.3
Phvul.007G192100 Phaseolus vulgaris HOM05D000010 ORTHO05D003754 6.7e-10 67.8 116 39.7
Actinidia09539 Actinidia chinensis HOM05D000010 ORTHO05D003754 1.1e-09 67.0 123 42.3
Ciclev10021312m.g Citrus clementina HOM05D000010 ORTHO05D003754 1.1e-09 67.0 132 40.9
VMungo1383G0224 Vigna mungo HOM05D000010 ORTHO05D003754 1.1e-09 67.0 127 43.3
vmacro14815 Vaccinium macrocarpon HOM05D000010 ORTHO05D003754 1.5e-09 66.6 115 36.5
Gohir.D07G219900 Gossypium hirsutum HOM05D000010 ORTHO05D003754 2.5e-09 65.9 116 38.8
Psat0s1642g0040 Pisum sativum HOM05D000010 ORTHO05D003754 2.5e-09 65.9 106 47.2
Duzib138G0421 Durio zibethinus HOM05D000010 ORTHO05D003754 5.6e-09 64.7 121 40.5
arahy.Tifrunner.gnm1.ann1.8GCY61 Arachis hypogaea HOM05D000010 ORTHO05D003754 9.6e-09 63.9 139 43.9
Glyma.10G037700 Glycine max HOM05D000010 ORTHO05D003754 2.8e-08 62.4 131 45.0
CSS0003295 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003754 8.1e-08 60.8 82 46.3
Nn3g19685 Nelumbo nucifera HOM05D000010 ORTHO05D003754 1.1e-07 60.5 115 41.7
ClCG07G001130 Citrullus lanatus HOM05D000010 ORTHO05D003754 2.0e-06 56.2 116 35.3


User provided reference genes

Program Settings