Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 1.5e-147 526.2 273 100.0
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 3.7e-53 212.6 118 93.2
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 1.7e-50 203.8 147 72.8
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 5.1e-50 202.2 144 73.6
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 3.3e-49 199.5 144 75.0
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 4.7e-48 195.7 144 71.5
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 6.2e-48 195.3 153 70.6
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 1.4e-47 194.1 144 72.2
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 8.9e-47 191.4 144 70.1
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 1.5e-46 190.7 145 69.7
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 2.0e-46 190.3 144 72.2
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 2.0e-46 190.3 144 70.8
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 2.2e-45 186.8 146 67.8
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 1.1e-44 184.5 145 70.3
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 1.4e-44 184.1 145 69.7
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 1.4e-44 184.1 144 68.8
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 1.2e-43 181.0 143 67.8
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 1.2e-43 181.0 139 69.8
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.6e-43 180.6 120 75.8
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 1.6e-43 180.6 157 63.7
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 2.1e-43 180.3 147 67.3
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 2.1e-43 180.3 141 68.1
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 2.7e-43 179.9 151 62.9
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 3.5e-43 179.5 145 66.9
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 3.5e-43 179.5 141 68.8
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 4.6e-43 179.1 147 66.7
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 4.6e-43 179.1 151 65.6
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 6.0e-43 178.7 121 75.2
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 6.0e-43 178.7 151 64.2
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 7.8e-43 178.3 143 67.1
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 7.8e-43 178.3 140 68.6
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 7.8e-43 178.3 147 66.7
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 1.7e-42 177.2 145 66.9
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 1.7e-42 177.2 151 65.6
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 3.9e-42 176.0 144 68.1
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 6.6e-42 175.3 140 65.0
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 1.1e-41 174.5 143 64.3
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 1.5e-41 174.1 147 63.9
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 1.5e-41 174.1 143 67.1
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.9e-41 173.7 132 69.7
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 2.5e-41 173.3 120 71.7
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 3.3e-41 172.9 142 67.6
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 3.3e-41 172.9 120 71.7
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 9.6e-41 171.4 143 66.4
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 1.6e-40 170.6 143 62.2
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 2.1e-40 170.2 126 68.3
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 2.1e-40 170.2 143 61.5
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 2.8e-40 169.9 145 61.4
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 6.2e-40 168.7 120 73.3
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 6.2e-40 168.7 120 73.3
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 1.4e-39 167.5 147 61.2
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 1.8e-39 167.2 120 69.2
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 1.8e-39 167.2 144 64.6
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 1.8e-39 167.2 140 63.6
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 3.1e-39 166.4 141 64.5
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 4.0e-39 166.0 157 55.4
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 6.9e-39 165.2 144 61.8
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 9.0e-39 164.9 154 58.4
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 1.5e-38 164.1 120 70.0
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 3.4e-38 162.9 140 63.6
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 4.4e-38 162.5 146 62.3
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 4.4e-38 162.5 143 62.2
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 1.3e-37 161.0 143 60.1
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 1.7e-37 160.6 127 64.6
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 8.4e-37 158.3 145 57.9
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 8.4e-37 158.3 139 59.7
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 4.2e-36 156.0 145 57.9
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 4.2e-36 156.0 145 62.1
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 5.4e-36 155.6 147 58.5
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 1.2e-35 154.5 149 60.4
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 1.2e-35 154.5 149 60.4
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 3.5e-35 152.9 141 58.2
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 6.0e-35 152.1 121 65.3
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 6.0e-35 152.1 143 59.4
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 7.8e-35 151.8 127 62.2
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 7.8e-35 151.8 141 58.2
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 1.0e-34 151.4 141 57.4
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 1.0e-34 151.4 120 65.0
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 1.3e-34 151.0 142 55.6
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 6.6e-34 148.7 144 57.6
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 8.7e-34 148.3 141 57.4
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 1.1e-33 147.9 148 58.1
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 1.9e-33 147.1 124 58.9
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 7.3e-33 145.2 121 59.5
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 9.6e-33 144.8 151 56.3
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 1.3e-32 144.4 122 61.5
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 1.6e-32 144.1 122 62.3
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 2.1e-32 143.7 142 56.3
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 2.8e-32 143.3 122 60.7
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 2.8e-32 143.3 122 60.7
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 2.8e-32 143.3 148 56.8
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 2.8e-32 143.3 109 69.7
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.8e-31 140.6 145 55.9
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 6.9e-31 138.7 144 54.2
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 4.9e-29 132.5 102 67.6
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 1.4e-28 131.0 107 66.4
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 1.2e-27 127.9 106 62.3
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 1.1e-25 121.3 97 67.0
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 5.6e-25 119.0 83 74.7
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 6.5e-21 105.5 111 51.4
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 3.7e-16 89.7 108 47.2
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 3.1e-15 86.7 111 40.5
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 3.1e-15 86.7 77 62.3
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 8.4e-13 78.6 66 65.2
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.9e-12 77.4 108 40.7
Mapoly0037s0134 Marchantia polymorpha HOM05D007363 ORTHO05D009018 3.2e-12 76.6 109 40.4
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 7.1e-12 75.5 58 70.7
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 4.6e-11 72.8 58 69.0
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 8.7e-10 68.6 113 35.4
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 2.5e-09 67.0 105 39.0
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 8.2e-08 62.0 113 34.5
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 5.9e-06 55.8 86 39.5
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 5.9e-06 55.8 92 38.0
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 7.7e-06 55.5 92 38.0
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 1.0e-05 55.1 86 37.2


User provided reference genes

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