Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.1e-173 613.2 317 100.0
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 1.3e-169 599.7 319 98.1
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 1.3e-169 599.7 319 98.1
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.1e-136 490.3 308 82.5
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 1.2e-135 486.9 310 81.9
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 1.1e-133 480.3 311 81.0
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 3.3e-133 478.8 308 81.8
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.6e-132 476.5 304 81.6
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.6e-132 476.5 305 82.0
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 2.1e-132 476.1 309 81.6
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.8e-131 473.0 304 81.9
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 4.4e-130 468.4 307 79.8
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 4.4e-130 468.4 307 78.8
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.3e-129 466.8 311 77.8
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.3e-129 466.8 312 77.9
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 2.9e-129 465.7 310 77.1
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 6.4e-129 464.5 312 78.5
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.8e-128 463.0 312 76.3
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 3.2e-128 462.2 307 79.8
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.1e-128 461.8 307 78.8
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 4.1e-128 461.8 306 80.1
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 9.2e-128 460.7 307 77.9
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 9.2e-128 460.7 312 76.9
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.0e-127 459.5 311 77.8
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 4.6e-127 458.4 306 77.5
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 7.8e-127 457.6 306 77.1
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.0e-126 457.2 306 79.1
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.7e-126 456.4 305 78.7
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.7e-126 456.4 305 79.7
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 3.9e-126 455.3 308 79.5
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 8.6e-126 454.1 310 77.4
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.5e-125 453.4 300 79.3
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 2.5e-125 452.6 299 80.6
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 4.3e-125 451.8 308 77.9
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 4.3e-125 451.8 307 77.2
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 5.6e-125 451.4 301 79.1
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 9.5e-125 450.7 305 76.4
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 1.2e-122 443.7 303 77.9
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.2e-122 443.7 306 76.8
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.7e-121 439.9 303 77.2
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 8.3e-121 437.6 315 75.6
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 2.4e-120 436.0 300 76.7
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.1e-120 435.3 315 74.6
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 7.0e-120 434.5 311 74.0
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 9.2e-120 434.1 303 74.3
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 3.5e-119 432.2 304 74.7
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.3e-118 430.3 313 73.5
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.7e-118 429.9 307 75.2
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 2.3e-118 429.5 303 75.9
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 3.0e-118 429.1 308 74.7
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 5.0e-118 428.3 304 75.0
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 5.0e-118 428.3 303 75.9
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 5.0e-118 428.3 321 72.0
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 5.0e-118 428.3 313 74.1
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 6.6e-118 427.9 308 74.0
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.6e-118 427.9 304 74.3
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 6.6e-118 427.9 305 73.4
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 8.6e-118 427.6 309 74.1
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.1e-117 427.2 311 71.1
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 2.5e-117 426.0 301 76.4
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 2.5e-117 426.0 306 73.9
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 4.3e-117 425.2 312 74.0
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 5.6e-117 424.9 297 76.1
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 7.3e-117 424.5 301 74.8
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.3e-117 424.5 311 73.3
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 2.8e-116 422.5 305 73.1
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.2e-116 421.4 311 73.3
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 8.1e-116 421.0 299 75.3
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.1e-115 420.6 303 73.6
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.1e-115 420.6 304 74.7
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 2.3e-115 419.5 312 71.8
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 4.0e-115 418.7 306 72.9
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 4.0e-115 418.7 305 73.1
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 4.0e-115 418.7 305 70.5
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 8.9e-115 417.5 310 72.6
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 1.2e-114 417.2 316 72.2
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 2.0e-114 416.4 304 72.4
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 2.6e-114 416.0 311 73.0
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.6e-114 416.0 327 69.4
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 5.8e-114 414.8 305 71.1
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 7.5e-114 414.5 311 70.4
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.3e-113 413.7 308 71.1
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.2e-113 412.9 292 76.4
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 2.9e-113 412.5 309 71.2
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 2.9e-113 412.5 309 71.2
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.4e-112 410.2 303 71.3
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.9e-112 409.8 308 71.1
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.9e-112 409.8 309 71.5
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.6e-111 406.8 303 71.6
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 1.7e-110 403.3 303 71.6
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.7e-110 403.3 302 72.2
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 8.6e-110 401.0 303 69.6
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 8.6e-110 401.0 302 71.2
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.5e-109 400.2 303 71.0
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 2.5e-109 399.4 315 69.5
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.2e-108 397.1 296 73.6
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 2.1e-108 396.4 309 70.6
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 4.7e-108 395.2 300 70.0
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 4.7e-108 395.2 312 67.6
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.8e-107 393.3 307 69.1
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 1.8e-107 393.3 306 69.0
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 5.2e-107 391.7 311 66.9
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 5.2e-107 391.7 303 68.6
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 2.6e-106 389.4 312 67.0
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 2.6e-106 389.4 306 68.3
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.3e-105 387.1 305 68.9
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 6.4e-105 384.8 288 71.9
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 6.4e-105 384.8 300 70.0
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 4.1e-104 382.1 294 71.1
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-103 380.6 303 68.0
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 1.0e-102 377.5 304 67.8
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 2.3e-102 376.3 302 69.2
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 3.0e-102 375.9 306 67.0
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 7.3e-101 371.3 244 79.1
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.3e-94 350.5 240 77.5
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.3e-92 344.0 308 62.7
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 8.7e-86 321.2 313 60.1
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 3.6e-84 315.8 216 76.9
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 6.2e-84 315.1 305 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.1e-71 273.5 299 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 6.0e-71 271.9 299 53.5
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.8e-67 260.4 215 66.0
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.3e-65 254.2 290 51.7
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 9.3e-64 248.1 263 60.1
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.7e-63 246.5 196 69.4
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 7.9e-63 245.0 239 57.3
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 5.1e-62 242.3 285 47.0
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 4.1e-59 232.6 293 50.2
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 9.1e-51 204.9 284 42.6
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 5.9e-50 202.2 323 40.2
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 5.9e-50 202.2 126 81.0
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.1e-48 198.0 320 42.8
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 2.5e-48 196.8 258 48.8
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.0e-46 189.9 126 73.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.5e-40 170.2 299 38.5
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 3.7e-36 156.4 129 64.3
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 4.8e-36 156.0 94 84.0
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.2e-31 141.4 303 36.0
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 4.7e-31 139.4 205 41.0
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 1.8e-30 137.5 215 42.3
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 5.7e-29 132.5 99 68.7
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 7.7e-26 122.1 128 52.3
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 2.5e-24 117.1 165 46.1
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 2.5e-24 117.1 165 46.1
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 2.5e-24 117.1 165 46.1
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.6e-23 113.2 76 77.6
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.2e-21 108.2 61 86.9
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 2.0e-21 107.5 164 42.7
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 9.8e-21 105.1 172 44.2
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 2.2e-20 104.0 65 81.5
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 2.5e-16 90.5 71 69.0
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 4.3e-16 89.7 71 67.6
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 4.3e-16 89.7 80 58.8
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 4.0e-14 83.2 82 59.8
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 1.7e-09 67.8 97 43.3
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.3e-09 67.4 95 45.3
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.2e-07 61.6 40 72.5
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.1e-06 58.5 59 57.6


User provided reference genes

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