Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 1.3e-299 1032.3 527 100.0
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 1.7e-280 968.8 497 99.2
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 1.5e-279 965.7 497 98.8
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 1.4e-242 842.8 497 85.9
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 2.1e-201 706.1 507 72.6
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 5.0e-187 658.3 495 70.5
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 8.5e-187 657.5 499 69.9
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 1.2e-185 653.7 497 70.2
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 1.8e-184 649.8 524 67.7
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 5.7e-183 644.8 492 70.1
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 5.7e-183 644.8 494 68.2
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 1.3e-182 643.7 492 69.5
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 2.2e-182 642.9 509 68.0
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 2.8e-182 642.5 492 69.3
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 3.7e-182 642.1 503 68.6
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 1.1e-181 640.6 497 68.4
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 1.4e-181 640.2 498 68.7
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 3.1e-181 639.0 492 68.5
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 4.1e-181 638.6 499 67.5
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 5.3e-181 638.3 497 69.2
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 9.1e-181 637.5 467 71.3
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 2.6e-180 636.0 497 69.0
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 3.5e-180 635.6 496 67.7
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 7.7e-180 634.4 497 69.2
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 3.8e-179 632.1 498 67.3
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 8.5e-179 630.9 497 68.2
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 3.2e-178 629.0 492 67.7
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 4.2e-178 628.6 503 66.6
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 2.1e-177 626.3 492 68.3
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 3.6e-177 625.5 503 66.0
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 6.1e-177 624.8 503 66.0
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 8.0e-177 624.4 505 65.0
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 1.4e-176 623.6 497 67.8
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 1.8e-176 623.2 505 66.5
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 1.8e-176 623.2 496 66.7
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 1.8e-176 623.2 496 67.1
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 2.3e-176 622.9 505 66.5
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 2.3e-176 622.9 497 65.0
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 2.3e-176 622.9 497 66.8
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 4.0e-176 622.1 497 66.8
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 4.0e-176 622.1 495 66.7
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 5.2e-176 621.7 496 66.5
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 1.5e-175 620.2 492 67.3
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 1.5e-175 620.2 497 66.4
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 2.0e-175 619.8 497 67.0
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 2.6e-175 619.4 492 67.3
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 3.4e-175 619.0 501 66.1
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 5.7e-175 618.2 501 66.3
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 5.7e-175 618.2 501 66.3
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 9.7e-175 617.5 497 67.0
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 1.7e-174 616.7 464 70.5
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 1.7e-174 616.7 492 66.9
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 6.3e-174 614.8 495 65.9
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 4.1e-173 612.1 497 66.4
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 5.3e-173 611.7 505 64.0
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 7.0e-173 611.3 492 66.7
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 9.1e-173 610.9 505 65.1
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 3.5e-172 609.0 505 63.6
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 4.5e-172 608.6 501 63.5
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 1.0e-171 607.4 522 63.4
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 1.7e-171 606.7 495 62.6
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 1.7e-171 606.7 496 64.3
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 1.7e-171 606.7 507 63.1
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 8.5e-171 604.4 507 62.5
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 1.1e-170 604.0 505 63.0
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 1.5e-170 603.6 497 64.0
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 1.9e-170 603.2 504 63.1
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 1.9e-170 603.2 498 66.3
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 2.5e-170 602.8 528 60.4
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 3.2e-170 602.4 529 60.7
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 3.2e-170 602.4 503 62.8
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 5.5e-170 601.7 528 60.6
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 9.4e-170 600.9 529 60.5
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 2.1e-169 599.7 475 67.6
Dinv14589 Davidia involucrata HOM05D003580 ORTHO05D004441 6.1e-169 598.2 447 72.7
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 6.1e-169 598.2 520 61.5
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 8.0e-169 597.8 500 63.8
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 1.0e-168 597.4 500 63.6
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 1.8e-168 596.7 526 60.5
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 1.8e-168 596.7 495 63.0
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 3.0e-168 595.9 503 62.4
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 2.0e-167 593.2 497 62.4
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 2.0e-167 593.2 497 62.4
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 4.4e-167 592.0 526 60.5
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 1.1e-165 587.4 497 62.0
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 1.4e-165 587.0 500 63.2
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 5.4e-165 585.1 524 60.3
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 1.2e-164 583.9 524 60.5
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 1.6e-164 583.6 526 60.5
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 1.0e-163 580.9 521 59.9
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 2.3e-163 579.7 497 61.8
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 3.8e-163 578.9 523 60.0
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 5.0e-163 578.6 505 61.8
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 6.6e-163 578.2 500 63.0
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 1.1e-162 577.4 497 64.4
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 5.5e-162 575.1 508 61.0
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 7.2e-162 574.7 503 61.0
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 6.1e-161 571.6 500 63.2
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 1.4e-160 570.5 499 61.1
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 2.4e-157 559.7 502 59.8
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 9.2e-157 557.8 445 66.1
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 1.2e-156 557.4 524 57.6
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 2.9e-155 552.7 529 56.7
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 4.7e-153 545.4 504 59.1
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 3.4e-151 539.3 445 63.1
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 6.0e-148 528.5 495 58.6
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 2.3e-147 526.6 493 58.0
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 1.1e-146 524.2 498 58.2
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.1e-146 524.2 498 58.2
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.2e-145 520.8 493 58.0
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 4.1e-141 505.8 464 59.1
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 1.1e-136 491.1 563 48.5
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 4.0e-136 489.2 440 57.5
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 2.0e-135 486.9 500 51.8
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 3.9e-131 472.6 497 52.3
SEGI_09994 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.9e-126 456.4 483 52.6
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.9e-126 456.4 483 52.6
Atru.chr10.123 Acer truncatum HOM05D003580 ORTHO05D004441 1.1e-125 454.5 347 71.5
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 1.1e-125 454.5 442 56.1
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 1.6e-116 424.1 500 47.8
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 1.0e-115 421.4 504 47.4
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 8.7e-115 418.3 504 46.8
Atru.chr10.105 Acer truncatum HOM05D003580 ORTHO05D004441 2.5e-106 390.2 301 72.4
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 3.2e-101 373.2 460 44.6
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 9.0e-96 355.1 459 45.1
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 1.0e-94 351.7 430 44.7
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 3.3e-90 336.7 473 41.6
CBR_g38826 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-83 314.7 486 39.9
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 2.5e-69 267.3 217 63.1
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 4.1e-56 223.4 497 34.2
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 1.2e-52 211.8 148 70.9
SEGI_41100 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.3e-49 201.8 237 44.7
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 9.2e-48 195.7 135 71.1
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 9.5e-45 185.7 149 67.1
FvH4_3g34230 Fragaria vesca HOM05D003580 ORTHO05D004441 1.2e-39 168.7 160 57.5
SEGI_20620 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.5e-37 161.0 168 47.6
SEGI_26119 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.3e-37 160.6 212 41.5
SEGI_17593 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 9.5e-37 159.1 168 45.2
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 8.0e-36 156.0 190 42.6
SEGI_21703 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.8e-34 149.8 157 46.5
SEGI_22494 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.9e-32 144.8 136 49.3
Actinidia22485 Actinidia chinensis HOM05D003580 ORTHO05D004441 2.4e-32 144.4 184 48.9
SEGI_01451 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.4e-32 143.3 161 44.1
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 5.0e-30 136.7 307 34.5
SEGI_10836 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.3e-29 134.0 150 43.3
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 2.1e-28 131.3 183 41.5
SEGI_12986 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.6e-28 130.6 134 47.0
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 4.4e-26 123.6 420 22.9
SEGI_37648 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.9e-25 120.9 131 45.8
SEGI_18317 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.7e-23 114.4 129 44.2
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 3.0e-22 110.9 227 33.0
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 7.3e-21 106.3 125 40.8
SEGI_23236 Sequoiadendron giganteum HOM05D003580 ORTHO05D000001 2.1e-20 104.8 163 37.4
SEGI_00259 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.8e-20 104.4 130 41.5
SEGI_10162 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.2e-20 103.2 146 40.4
SEGI_40357 Sequoiadendron giganteum HOM05D003580 ORTHO05D000003 1.8e-19 101.7 133 39.8
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 2.3e-19 101.3 74 66.2
SEGI_40013 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.3e-19 101.3 145 39.3
SEGI_13143 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.5e-18 98.6 103 43.7
SEGI_37860 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.2e-17 94.7 119 37.8
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.9e-17 93.6 88 52.3
SEGI_07846 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.4e-16 92.0 99 47.5
SEGI_32072 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.6e-15 87.0 95 40.0
SEGI_00546 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.8e-12 77.8 107 40.2
SEGI_06299 Sequoiadendron giganteum HOM05D003580 ORTHO05D019257 6.2e-12 76.6 66 54.5
Actinidia35884 Actinidia chinensis HOM05D000084 ORTHO05D014724 1.7e-09 68.6 101 44.6
VMungo1383G0656 Vigna mungo HOM05D003580 ORTHO05D004441 4.6e-07 60.5 49 65.3


User provided reference genes

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