Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 1.3e-154 549.7 265 100.0
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 3.5e-120 435.3 253 83.0
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 5.2e-108 394.8 269 72.9
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 1.2e-107 393.7 261 72.0
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 2.8e-106 389.0 254 75.2
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 6.3e-106 387.9 261 71.6
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 4.1e-105 385.2 255 72.9
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 2.0e-104 382.9 262 72.1
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 4.5e-104 381.7 255 71.8
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 2.2e-103 379.4 222 82.4
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 2.2e-103 379.4 254 69.3
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 3.2e-102 375.6 258 72.1
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 7.2e-102 374.4 262 69.5
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 4.7e-101 371.7 254 69.3
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 8.0e-101 370.9 194 94.8
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 1.0e-100 370.5 255 69.0
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 2.0e-99 366.3 254 68.5
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 1.3e-98 363.6 258 69.4
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 1.7e-98 363.2 258 69.4
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 2.8e-98 362.5 269 69.1
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 8.3e-98 360.9 258 69.8
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 4.1e-97 358.6 258 69.0
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 9.1e-97 357.5 257 68.5
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 9.1e-97 357.5 258 69.4
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 2.0e-96 356.3 260 68.1
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 2.0e-96 356.3 260 68.1
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 2.3e-95 352.8 258 69.4
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 6.6e-95 351.3 258 69.0
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 8.6e-95 350.9 260 67.3
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 5.5e-94 348.2 259 68.0
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 2.1e-93 346.3 254 68.9
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 2.8e-93 345.9 272 65.1
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 3.6e-93 345.5 239 71.1
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 1.4e-92 343.6 259 66.8
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 5.2e-92 341.7 259 65.6
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 9.8e-91 337.4 259 64.9
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 3.1e-89 332.4 254 64.6
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 4.1e-89 332.0 256 66.0
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 4.5e-88 328.6 260 62.7
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 5.9e-88 328.2 257 62.3
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 7.8e-88 327.8 258 62.8
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.6e-85 320.1 264 62.9
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 3.6e-85 318.9 269 61.0
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 1.8e-84 316.6 245 67.3
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 6.8e-84 314.7 258 61.2
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 1.2e-83 313.9 258 62.4
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.5e-83 313.5 255 62.4
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 2.0e-83 313.2 258 61.2
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 9.8e-83 310.8 255 62.4
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 1.7e-82 310.1 252 63.1
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 3.7e-82 308.9 258 61.6
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 3.7e-82 308.9 256 61.7
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 3.7e-82 308.9 255 62.0
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 4.9e-82 308.5 255 61.6
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 6.4e-82 308.1 260 60.8
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 6.4e-82 308.1 254 61.0
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 6.4e-82 308.1 270 63.0
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 1.1e-81 307.4 292 56.2
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 1.4e-81 307.0 254 63.4
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 1.4e-81 307.0 255 61.6
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 2.0e-80 303.1 254 61.0
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 2.7e-80 302.8 255 61.2
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 7.8e-80 301.2 257 59.9
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 1.3e-79 300.4 183 77.6
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 1.7e-79 300.1 255 60.8
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 1.1e-78 297.4 255 58.8
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 2.8e-77 292.7 208 70.7
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 3.6e-77 292.4 259 58.3
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 3.6e-77 292.4 259 58.3
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 1.4e-76 290.4 273 54.6
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 4.0e-76 288.9 206 68.0
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 6.8e-76 288.1 185 75.7
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 2.0e-75 286.6 178 73.6
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 2.9e-74 282.7 258 57.4
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 2.9e-74 282.7 260 56.9
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 5.4e-73 278.5 280 52.1
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 1.3e-71 273.9 204 65.7
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 1.5e-70 270.4 275 53.8
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 1.6e-69 266.9 258 53.5
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 4.7e-69 265.4 252 56.3
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 3.1e-68 262.7 274 52.2
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.5e-67 260.4 198 67.2
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 2.9e-66 256.1 257 51.0
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 2.4e-65 253.1 192 68.2
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 1.0e-63 247.7 265 50.6
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.1e-61 240.0 190 64.7
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 3.6e-61 239.2 250 54.0
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 3.1e-60 236.1 254 49.6
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 4.4e-59 232.3 266 49.2
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 4.4e-59 232.3 324 44.1
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 2.9e-58 229.6 208 58.7
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 2.4e-57 226.5 205 59.0
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 5.4e-57 225.3 278 48.6
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 2.1e-56 223.4 258 48.8
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 4.6e-56 222.2 271 46.5
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 4.3e-54 215.7 149 66.4
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 2.4e-52 209.9 156 66.7
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 5.3e-52 208.8 191 58.1
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 4.3e-46 189.1 161 62.1
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 6.2e-45 185.3 177 57.6
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 2.1e-40 170.2 160 59.4
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 6.0e-40 168.7 137 64.2
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 2.5e-38 163.3 266 40.6
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.6e-37 160.6 134 63.4
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 1.2e-35 154.5 168 55.4
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 5.8e-35 152.1 162 53.7
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 3.5e-32 142.9 249 37.8
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 4.3e-30 136.0 102 56.9
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.9e-23 112.8 61 80.3
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 7.4e-22 108.6 175 36.6
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.7e-21 106.3 62 77.4
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 1.3e-18 97.8 204 33.3
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 5.5e-17 92.4 185 34.1
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 3.0e-15 86.7 177 33.9
Os04g0602700 Oryza sativa ssp. japonica HOM05D007105 ORTHO05D009304 1.1e-09 68.2 205 29.3
AT1G31600 Arabidopsis thaliana HOM05D007105 ORTHO05D009304 1.6e-08 64.3 200 27.5
BcaB04g18148 Brassica carinata HOM05D007105 ORTHO05D009304 2.7e-08 63.5 207 27.5
CBR_g45547 Chara braunii HOM05D003201 ORTHO05D008805 1.8e-07 60.8 258 27.1
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 5.1e-07 59.3 203 27.1
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 5.1e-07 59.3 203 27.1
A08p10520 Brassica napus HOM05D007105 ORTHO05D006179 5.7e-06 55.8 136 30.1
BraA08t33052Z Brassica rapa HOM05D007105 ORTHO05D009304 5.7e-06 55.8 202 25.7
Psat2g014480 Pisum sativum HOM05D006806 ORTHO05D008448 9.7e-06 55.1 84 35.7


User provided reference genes

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