Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.6e-300 1035.4 553 100.0
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 2.8e-281 971.5 566 93.5
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 3.1e-240 835.1 555 81.4
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 2.0e-239 832.4 551 81.1
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 7.0e-216 754.2 555 74.2
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 5.5e-213 744.6 559 71.9
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 6.8e-211 737.6 562 70.8
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.3e-209 733.4 557 71.6
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 3.9e-206 721.8 563 70.2
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.5e-205 719.9 550 71.3
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 9.5e-205 717.2 566 69.8
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 9.5e-205 717.2 556 70.0
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 1.8e-203 713.0 557 69.5
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.3e-203 712.6 566 69.8
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 5.2e-203 711.4 553 68.5
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 5.2e-203 711.4 555 69.4
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 1.2e-202 710.3 554 69.0
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.4e-202 708.4 582 67.9
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 1.7e-201 706.4 550 69.6
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.7e-201 705.3 566 68.7
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-200 703.7 582 67.5
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.1e-200 703.7 550 69.6
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 1.4e-200 703.4 561 68.8
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.2e-200 702.2 550 69.3
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.0e-200 701.0 582 67.5
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 3.5e-199 698.7 561 68.4
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 7.8e-199 697.6 553 68.9
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 1.0e-198 697.2 563 68.0
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 3.0e-198 695.7 551 67.9
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 3.0e-198 695.7 553 68.7
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 8.6e-198 694.1 572 66.8
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.1e-197 693.7 554 68.2
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 1.2e-196 690.3 560 68.9
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.1e-195 687.2 557 67.7
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 2.3e-195 686.0 550 66.5
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 8.9e-195 684.1 563 65.7
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 1.2e-194 683.7 552 66.3
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.2e-194 683.7 562 65.8
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.3e-193 680.2 550 68.2
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 6.4e-193 677.9 552 65.9
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 6.4e-193 677.9 552 66.1
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 2.4e-192 676.0 559 65.7
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 3.2e-192 675.6 564 64.4
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 7.1e-192 674.5 554 66.2
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 2.1e-191 672.9 553 64.4
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 5.1e-190 668.3 549 65.4
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.1e-189 667.2 552 65.9
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 1.1e-189 667.2 559 66.5
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.5e-189 666.8 554 65.7
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.5e-189 666.8 555 64.5
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 2.5e-189 666.0 554 66.1
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 2.5e-189 666.0 555 66.5
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 6.2e-188 661.4 557 66.4
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 8.1e-188 661.0 560 65.4
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.1e-187 660.6 657 58.3
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 3.1e-187 659.1 554 64.6
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 1.2e-186 657.1 557 64.1
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.4e-186 655.6 563 65.4
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 7.6e-186 654.4 559 65.1
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 9.2e-184 647.5 569 62.7
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 1.2e-183 647.1 569 62.6
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 2.1e-183 646.4 555 63.6
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 6.6e-182 641.3 555 63.2
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 1.1e-181 640.6 563 63.9
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.3e-181 638.6 563 63.9
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 1.8e-179 633.3 558 63.6
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.2e-178 630.6 584 61.0
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 2.6e-178 629.4 553 61.7
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 9.9e-178 627.5 574 61.3
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.3e-177 627.1 549 60.8
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 2.9e-177 625.9 549 64.7
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.4e-176 623.6 559 62.4
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.2e-175 620.5 555 61.6
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 1.6e-175 620.2 547 61.4
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 6.0e-175 618.2 557 60.3
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 4.3e-173 612.1 549 61.4
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 5.6e-173 611.7 560 58.6
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 4.8e-172 608.6 554 59.6
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 6.2e-172 608.2 556 59.7
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 2.6e-170 602.8 552 60.9
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 3.4e-170 602.4 567 57.7
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 5.8e-170 601.7 549 60.1
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 2.2e-169 599.7 553 59.5
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 9.3e-168 594.3 570 56.7
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 9.3e-168 594.3 559 60.3
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 2.7e-167 592.8 561 56.5
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.6e-164 583.6 568 56.5
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 3.6e-164 582.4 572 56.3
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 4.0e-163 578.9 568 56.7
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 1.5e-162 577.0 564 57.1
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 2.0e-162 576.6 561 60.4
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 4.2e-160 568.9 577 54.9
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 7.1e-160 568.2 559 55.5
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 9.3e-160 567.8 559 55.5
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.2e-159 567.4 567 55.7
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.0e-158 564.3 556 55.4
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 3.9e-158 562.4 569 56.8
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 1.1e-157 560.8 561 54.4
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 1.0e-153 547.7 577 55.6
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.9e-151 538.1 420 69.0
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 7.4e-149 531.6 416 70.0
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 2.2e-145 520.0 553 56.2
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 2.5e-144 516.5 544 52.8
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 7.9e-143 511.5 447 60.9
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.6e-140 503.8 501 59.5
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 1.5e-138 497.3 557 53.0
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.5e-137 491.9 526 57.2
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 9.4e-136 488.0 424 63.0
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 2.9e-129 466.5 552 47.5
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 5.5e-128 462.2 306 76.8
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 5.7e-125 452.2 557 47.8
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.8e-123 447.2 370 65.4
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 4.7e-119 432.6 553 45.4
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 1.7e-116 424.1 281 76.9
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 9.1e-115 418.3 552 43.8
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 3.4e-109 399.8 552 43.7
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 4.2e-104 382.9 558 42.1
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 4.0e-102 376.3 384 52.9
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 8.6e-97 358.6 464 49.1
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 1.2e-95 354.8 493 47.1
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 2.0e-93 347.4 308 64.6
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.0e-89 335.1 526 44.5
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.0e-82 310.8 346 51.4
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-73 282.0 489 42.5
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-68 265.0 231 65.4
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-67 261.9 225 61.8
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.0e-65 253.8 173 74.0
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 2.1e-63 247.7 410 37.6
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.4e-60 236.1 158 73.4
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.2e-50 205.3 146 73.3
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 4.5e-45 186.8 138 71.7
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-44 185.3 314 42.4
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 4.2e-43 180.3 139 68.3
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-40 171.4 118 76.3
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.5e-40 171.0 145 55.9
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 2.1e-39 167.9 118 74.6
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 8.7e-33 146.0 288 41.3
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 6.7e-25 119.8 84 71.4
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 8.2e-23 112.8 114 55.3
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 1.2e-21 109.0 514 26.8
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-20 105.5 175 40.6
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.3e-17 94.7 109 45.0
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 6.7e-17 93.2 169 45.6
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 2.0e-16 91.7 56 71.4
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 2.4e-14 84.7 70 64.3
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-14 84.7 166 38.6
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-12 78.2 169 40.8
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-11 74.7 156 36.5
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 4.2e-11 73.9 61 62.3
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 5.5e-11 73.6 48 75.0
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 7.2e-11 73.2 42 78.6
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 5.2e-09 67.0 46 69.6
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 1.5e-08 65.5 186 36.0
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-08 65.5 52 63.5
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 4.4e-08 63.9 44 65.9
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 5.7e-08 63.5 54 53.7
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 3.7e-07 60.8 36 77.8
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 6.3e-07 60.1 37 73.0
arahy.Tifrunner.gnm1.ann1.RZAJ21 Arachis hypogaea HOM05D004469 ORTHO05D005429 3.1e-06 57.8 41 73.2


User provided reference genes

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