Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002244 Carpinus fangiana HOM05D002015 ORTHO05D002395 7.4e-83 310.5 153 100.0
Haze_25423 Corylus avellana HOM05D002015 ORTHO05D002395 7.5e-43 177.6 86 98.8
CANSAT54G1710 Cannabis sativa HOM05D002015 ORTHO05D002395 4.7e-37 158.3 76 98.7
PGR102G1995 Punica granatum HOM05D002015 ORTHO05D002395 6.1e-37 157.9 76 97.4
ATR0753G032 Amborella trichopoda HOM05D002015 ORTHO05D002395 1.4e-36 156.8 76 97.4
COL.COLO4_04700 Corchorus olitorius HOM05D002015 ORTHO05D002395 1.4e-36 156.8 76 97.4
QL10p038838 Quercus lobata HOM05D002015 ORTHO05D002395 1.4e-36 156.8 75 97.3
Thecc.01G237100 Theobroma cacao HOM05D002015 ORTHO05D002395 1.4e-36 156.8 76 96.1
Cc00_g22800 Coffea canephora HOM05D002015 ORTHO05D002395 2.3e-36 156.0 76 97.4
Sopen05g015850 Solanum pennellii HOM05D002015 ORTHO05D002395 2.3e-36 156.0 76 96.1
AUR62016371 Chenopodium quinoa HOM05D002015 ORTHO05D002395 3.0e-36 155.6 76 96.1
CAN.G148.11 Capsicum annuum HOM05D002015 ORTHO05D002395 4.0e-36 155.2 76 97.4
Duzib187G1484 Durio zibethinus HOM05D002015 ORTHO05D002395 4.0e-36 155.2 76 94.7
Oeu034383.2 Olea europaea HOM05D002015 ORTHO05D002395 4.0e-36 155.2 76 94.7
Solyc05g018650.4 Solanum lycopersicum HOM05D002015 ORTHO05D002395 4.0e-36 155.2 75 96.0
Atru.chr4.1149 Acer truncatum HOM05D002015 ORTHO05D002395 6.8e-36 154.5 76 94.7
CiPaw.03G253200 Carya illinoinensis HOM05D002015 ORTHO05D002395 6.8e-36 154.5 75 96.0
Eucgr.H05051 Eucalyptus grandis HOM05D002015 ORTHO05D002395 6.8e-36 154.5 76 94.7
Gohir.D11G232400 Gossypium hirsutum HOM05D002015 ORTHO05D002395 6.8e-36 154.5 76 94.7
Gorai.003G066400 Gossypium raimondii HOM05D002015 ORTHO05D002395 6.8e-36 154.5 76 94.7
AUR62011551 Chenopodium quinoa HOM05D002015 ORTHO05D002395 8.9e-36 154.1 76 94.7
Dinv20711 Davidia involucrata HOM05D002015 ORTHO05D002395 8.9e-36 154.1 76 94.7
Sc09g0004310 Simmondsia chinensis HOM05D002015 ORTHO05D002395 8.9e-36 154.1 76 94.7
Actinidia36587 Actinidia chinensis HOM05D002015 ORTHO05D002395 1.2e-35 153.7 76 94.7
SEGI_30429 Sequoiadendron giganteum HOM05D002015 ORTHO05D002395 1.2e-35 153.7 76 94.7
Nn7g38228 Nelumbo nucifera HOM05D002015 ORTHO05D002395 1.5e-35 153.3 76 94.7
unitig_744.g23970 Utricularia gibba HOM05D002015 ORTHO05D002395 1.5e-35 153.3 76 94.7
Glyma.05G197600 Glycine max HOM05D002015 ORTHO05D002395 2.0e-35 152.9 76 94.7
Lj4g0012822 Lotus japonicus HOM05D002015 ORTHO05D002395 2.0e-35 152.9 76 94.7
VMungo0251G0443 Vigna mungo HOM05D002015 ORTHO05D002395 2.0e-35 152.9 76 94.7
arahy.Tifrunner.gnm1.ann1.FX45DR Arachis hypogaea HOM05D002015 ORTHO05D002395 2.6e-35 152.5 75 94.7
EL10Ac9g21932 Beta vulgaris HOM05D002015 ORTHO05D002395 2.6e-35 152.5 76 93.4
FAN02G0045 Fragaria x ananassa HOM05D002015 ORTHO05D002395 2.6e-35 152.5 72 98.6
FAN05G5628 Fragaria x ananassa HOM05D002015 ORTHO05D002395 2.6e-35 152.5 72 98.6
FAN09G0141 Fragaria x ananassa HOM05D002015 ORTHO05D002395 2.6e-35 152.5 72 98.6
FAN14G1337 Fragaria x ananassa HOM05D002015 ORTHO05D002395 2.6e-35 152.5 72 98.6
RcHm_v2.0_Chr3g0448431 Rosa chinensis HOM05D002015 ORTHO05D002395 2.6e-35 152.5 72 98.6
GSVIVG01022426001 Vitis vinifera HOM05D002015 ORTHO05D002395 2.6e-35 152.5 76 94.7
CSS0012423 Camellia sinensis var. sinensis HOM05D002015 ORTHO05D002395 3.4e-35 152.1 76 94.7
Ca_17592_v3 Cicer arietinum L. HOM05D002015 ORTHO05D002395 3.4e-35 152.1 76 93.4
TPR.G12901 Trifolium pratense HOM05D002015 ORTHO05D002395 3.4e-35 152.1 76 93.4
Medtr8g095320 Medicago truncatula HOM05D002015 ORTHO05D002395 4.4e-35 151.8 76 92.1
Phvul.002G278100 Phaseolus vulgaris HOM05D002015 ORTHO05D002395 4.4e-35 151.8 76 93.4
CDE05G2649 Ceratophyllum demersum HOM05D002015 ORTHO05D002395 5.7e-35 151.4 76 92.1
Glyma.08G005000 Glycine max HOM05D002015 ORTHO05D002395 5.7e-35 151.4 76 93.4
Lj4A816T49 Lonicera japonica HOM05D002015 ORTHO05D002395 5.7e-35 151.4 76 93.4
MELO3C019619.2 Cucumis melo HOM05D002015 ORTHO05D002395 7.5e-35 151.0 74 94.6
CsaV3_6G013410 Cucumis sativus L. HOM05D002015 ORTHO05D002395 7.5e-35 151.0 74 94.6
SGA_v2.0_scaffold54G19577 Striga asiatica HOM05D002015 ORTHO05D002395 7.5e-35 151.0 76 93.4
TWI79G0872 Tripterygium wilfordii HOM05D002015 ORTHO05D002395 7.5e-35 151.0 74 95.9
Ciclev10025338m.g Citrus clementina HOM05D002015 ORTHO05D002395 9.8e-35 150.6 76 92.1
Gohir.A05G375550 Gossypium hirsutum HOM05D002015 ORTHO05D002395 9.8e-35 150.6 76 93.4
Gohir.D04G040200 Gossypium hirsutum HOM05D002015 ORTHO05D002395 9.8e-35 150.6 76 93.4
Gorai.012G045300 Gossypium raimondii HOM05D002015 ORTHO05D002395 9.8e-35 150.6 76 93.4
Lalb_Chr07g0184031 Lupinus albus HOM05D002015 ORTHO05D002395 9.8e-35 150.6 76 92.1
Psat7g042040 Pisum sativum HOM05D002015 ORTHO05D002395 9.8e-35 150.6 76 90.8
Thhalv10001248m.g Eutrema salsugineum HOM05D002015 ORTHO05D002395 1.3e-34 150.2 76 92.1
Zm00001eb244110 Zea mays HOM05D002015 ORTHO05D002395 1.3e-34 150.2 76 93.4
MD04G1239600 Malus domestica HOM05D002015 ORTHO05D002395 1.7e-34 149.8 76 93.4
MD12G1256700 Malus domestica HOM05D002015 ORTHO05D002395 1.7e-34 149.8 76 93.4
TWI31G0257 Tripterygium wilfordii HOM05D002015 ORTHO05D002395 1.7e-34 149.8 76 92.1
TAR628G0593 Trochodendron aralioides HOM05D002015 ORTHO05D002395 1.7e-34 149.8 76 92.1
ClCG02G018770 Citrullus lanatus HOM05D002015 ORTHO05D002395 2.2e-34 149.4 72 95.8
Prupe.6G357500 Prunus persica HOM05D002015 ORTHO05D002395 2.2e-34 149.4 76 93.4
Manes.13G076501 Manihot esculenta HOM05D002015 ORTHO05D002395 2.9e-34 149.1 76 92.1
CDE05G1398 Ceratophyllum demersum HOM05D002015 ORTHO05D002395 3.7e-34 148.7 76 92.1
Os05g0361200 Oryza sativa ssp. japonica HOM05D002015 ORTHO05D002395 3.7e-34 148.7 76 92.1
PSO017G5697 Papaver somniferum HOM05D002015 ORTHO05D002395 3.7e-34 148.7 73 93.2
PSO170G6825 Papaver somniferum HOM05D002015 ORTHO05D002395 3.7e-34 148.7 73 93.2
Potri.T010900 Populus trichocarpa HOM05D002015 ORTHO05D002395 3.7e-34 148.7 76 90.8
Potri.T010901 Populus trichocarpa HOM05D002015 ORTHO05D002395 3.7e-34 148.7 76 90.8
Sabra19G0009300 Salix brachista HOM05D002015 ORTHO05D002395 4.9e-34 148.3 76 89.5
THA.LOC104819475 Tarenaya hassleriana HOM05D002015 ORTHO05D002395 4.9e-34 148.3 72 94.4
TAR376G0144 Trochodendron aralioides HOM05D002015 ORTHO05D002395 6.4e-34 147.9 76 92.1
DCAR_023536 Daucus carota HOM05D002015 ORTHO05D002395 8.3e-34 147.5 76 92.1
Aa31LG5G9230 Aethionema arabicum HOM05D002015 ORTHO05D002395 1.4e-33 146.7 73 93.2
Aqoxy6G00054 Aquilegia oxysepala HOM05D002015 ORTHO05D002395 1.4e-33 146.7 72 94.4
AL4G25250 Arabidopsis lyrata HOM05D002015 ORTHO05D002395 1.4e-33 146.7 73 93.2
AT2G30390 Arabidopsis thaliana HOM05D002015 ORTHO05D002395 1.4e-33 146.7 73 93.2
Carub.0004s1154 Capsella rubella HOM05D002015 ORTHO05D002395 1.4e-33 146.7 73 93.2
Sp4g08120 Schrenkiella parvula HOM05D002015 ORTHO05D002395 1.4e-33 146.7 73 93.2
DCAR_026834 Daucus carota HOM05D002015 ORTHO05D002395 1.8e-33 146.4 76 89.5
Hma1.2p1_0057F.1_g032120 Hydrangea macrophylla HOM05D002015 ORTHO05D002395 1.8e-33 146.4 76 92.1
Nitab4.5_0001557g0010 Nicotiana tabacum HOM05D002015 ORTHO05D002395 1.8e-33 146.4 70 97.1
Sed0021813 Sechium edule HOM05D002015 ORTHO05D002395 1.8e-33 146.4 79 84.8
Sabra19G0002900 Salix brachista HOM05D002015 ORTHO05D002395 2.4e-33 146.0 72 93.1
BcaB08g35290 Brassica carinata HOM05D002015 ORTHO05D002395 3.2e-33 145.6 73 91.8
BcaC07g40814 Brassica carinata HOM05D002015 ORTHO05D002395 3.2e-33 145.6 73 91.8
BolC8t51382H Brassica oleracea HOM05D002015 ORTHO05D002395 3.2e-33 145.6 73 91.8
BraA09t40922Z Brassica rapa HOM05D002015 ORTHO05D002395 3.2e-33 145.6 73 91.8
Peaxi162Scf00090g00207 Petunia axillaris HOM05D002015 ORTHO05D002395 3.2e-33 145.6 68 100.0
CARHR123740 Cardamine hirsuta HOM05D002015 ORTHO05D002395 5.4e-33 144.8 72 93.1
Sed0000399 Sechium edule HOM05D002015 ORTHO05D002395 5.4e-33 144.8 74 91.9
Lsat_1_v5_gn_2_36961 Lactuca sativa HOM05D002015 ORTHO05D002395 7.0e-33 144.4 72 91.7
Mapoly0046s0095 Marchantia polymorpha HOM05D002015 ORTHO05D002395 2.7e-32 142.5 76 88.2
Lalb_Chr12g0202801 Lupinus albus HOM05D002015 ORTHO05D002395 3.5e-32 142.1 76 84.2
Pp3c2_31600 Physcomitrium patens HOM05D002015 ORTHO05D002395 5.9e-32 141.4 76 85.5
CiPaw.04G178800 Carya illinoinensis HOM05D002015 ORTHO05D002395 7.8e-32 141.0 73 91.8
ECA238G3540 Erigeron canadensis HOM05D002015 ORTHO05D002395 1.0e-31 140.6 72 90.3
Potri.004G138400 Populus trichocarpa HOM05D002015 ORTHO05D002395 1.3e-31 140.2 76 86.8
Migut.H00791 Erythranthe guttata HOM05D002015 ORTHO05D002395 1.7e-31 139.8 72 87.5
Pp3c1_7090 Physcomitrium patens HOM05D002015 ORTHO05D002395 2.3e-31 139.4 76 85.5
Pp3c1_7091 Physcomitrium patens HOM05D002015 ORTHO05D002395 2.3e-31 139.4 76 85.5
SMO367G0693 Selaginella moellendorffii HOM05D002015 ORTHO05D002395 5.6e-30 134.8 73 83.6
VMungo1309G2123 Vigna mungo HOM05D002015 ORTHO05D002395 5.6e-30 134.8 76 82.9
Phvul.009G157600 Phaseolus vulgaris HOM05D002015 ORTHO05D002395 9.5e-30 134.0 76 82.9
Lj1g0005010 Lotus japonicus HOM05D002015 ORTHO05D002395 1.6e-29 133.3 76 80.3
vmacro12732 Vaccinium macrocarpon HOM05D002015 ORTHO05D002395 1.6e-29 133.3 65 96.9
Ah.01g020790 Amaranthus hybridus HOM05D002015 ORTHO05D002395 2.8e-29 132.5 67 92.5
Glyma.06G159900 Glycine max HOM05D002015 ORTHO05D002395 2.8e-29 132.5 76 82.9
CBR_g28825 Chara braunii HOM05D002015 ORTHO05D002395 6.2e-29 131.3 76 75.0
Glyma.04G205600 Glycine max HOM05D002015 ORTHO05D002395 1.4e-28 130.2 76 81.6
Oeu053135.2 Olea europaea HOM05D002015 ORTHO05D002395 1.4e-28 130.2 69 91.3
Actinidia19953 Actinidia chinensis HOM05D002015 ORTHO05D002395 5.8e-27 124.8 60 100.0
Medtr3g097290 Medicago truncatula HOM05D002015 ORTHO05D002395 5.8e-27 124.8 77 80.5
unitig_21.g20950 Utricularia gibba HOM05D002015 ORTHO05D002395 2.2e-26 122.9 68 85.3
Psat5g057560 Pisum sativum HOM05D002015 ORTHO05D002395 1.4e-25 120.2 73 78.1
Pp3c11_6350 Physcomitrium patens HOM05D002015 ORTHO05D002395 1.6e-24 116.7 76 71.1
TPR.G28696 Trifolium pratense HOM05D002015 ORTHO05D002395 2.0e-24 116.3 77 76.6
Hund06575 Selenicereus undatus HOM05D002015 ORTHO05D002395 3.5e-24 115.5 57 98.2
A09p55140 Brassica napus HOM05D001978 ORTHO05D003036 7.3e-22 107.8 58 84.5
C08p38070 Brassica napus HOM05D001978 ORTHO05D003036 7.3e-22 107.8 58 84.5
HPP92_004645 Vanilla planifolia HOM05D002015 ORTHO05D002395 2.8e-21 105.9 57 87.7
PRCOL_00003592 Prasinoderma coloniale HOM05D002015 ORTHO05D002395 6.4e-18 94.7 68 63.2
Cre07.g339750 Chlamydomonas reinhardtii HOM05D002015 ORTHO05D002395 4.6e-16 88.6 59 61.0


User provided reference genes

Program Settings